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AT5G51550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EXORDIUM like 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXORDIUM like 3 (EXL3); CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXORDIUM like 5 (TAIR:AT2G17230.1); Has 398 Blast hits to 397 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEYCeggNOG:ENOG410Y43BEMBL:AB018109EMBL:AF428325EMBL:AY058883EMBL:AY087269EMBL:AY103306
EMBL:CP002688EnsemblPlants:AT5G51550EnsemblPlants:AT5G51550.1entrez:835229GeneID:835229Genevisible:Q9FHM9GO:GO:0005615
GO:GO:0009505GO:GO:0009506GO:GO:0048046GO:GO:0080167Gramene:AT5G51550.1hmmpanther:PTHR31279hmmpanther:PTHR31279:SF7
HOGENOM:HOG000239502InterPro:IPR006766iPTMnet:Q9FHM9KEGG:ath:AT5G51550OMA:SARRCPEPaxDb:Q9FHM9Pfam:PF04674
Pfam:Q9FHM9PRIDE:Q9FHM9PRO:PR:Q9FHM9Proteomes:UP000006548RefSeq:NP_199968.1STRING:3702.AT5G51550.1TAIR:AT5G51550
tair10-symbols:EXL3UniGene:At.7809UniProt:Q9FHM9
Coordinates (TAIR10) chr5:-:20939793..20940806
Molecular Weight (calculated) 36850.10 Da
IEP (calculated) 8.88
GRAVY (calculated) -0.04
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSLPVNLVL TVLTVFLTSP AQVIGYRPYP PKTNGSDQIF DASKKFEGSS NLVRLRYHMG PVLTNNITVH PIWYGTWQKS QKKIIREFIN SISAVGSKHP
101: SVSGWWKTVQ LYTDQTGSNI TGTVRLGEEK NDRFYSHGKS LTRLSIQSVI KSAVTSRSRP LPVNPKSGLY LLLTADDVYV QDFCGQVCGF HYFTFPSIVG
201: FTLPYAWVGN SAKLCPGVCA YPFAVPAFIP GLKPVKSPNG DVGVDGMISV IAHEIAELAT NPLVNAWYAG PDPVAPVEIA DLCEGIYGTG GGGSYTGQML
301: NDHSGATYNV NGIRRRYLIQ WLWSHVVSYC TGPNALD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)