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AT5G51400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.712
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25122472 (2014): Golgi Golgi apparatus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT2G45010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEQGeggNOG:ENOG410XSVREMBL:AY054680EMBL:BT002573EMBL:CP002688EMBL:U78866EMBL:U78870
EnsemblPlants:AT5G51400EnsemblPlants:AT5G51400.1entrez:835214GeneID:835214GO:GO:0005794Gramene:AT5G51400.1hmmpanther:PTHR15907
hmmpanther:PTHR15907:SF35HOGENOM:HOG000006219InterPro:IPR006461KEGG:ath:AT5G51400OMA:EASRSHPPfam:PF04749PhylomeDB:P94032
Proteomes:UP000006548RefSeq:NP_568759.1STRING:3702.AT5G51400.1TAIR:AT5G51400TIGRfam:TIGR01571TIGRFAMs:TIGR01571UniGene:At.23461
UniProt:P94032
Coordinates (TAIR10) chr5:-:20878784..20880036
Molecular Weight (calculated) 27017.30 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.22
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSDGGAPSR YVKLTKEQAP VDEIHPGELN QPIEVSHLAV HKCNECGQPL PENFEAPADE PWTTGIFGCT EDMNSFWLGL FCPSVLFGRV YETLSDEETS
101: WKKACICHSI VVEGGLTAAS MLACVPGIDP HTSLLIWEGL LFVWWMCGIY TGNVRQTLQR KYHLQNAPCD PCMVHCCLHF CAVCQEHREM KNRLSDNFVM
201: PMTVINPPPV QEMSASGDRD QHHHNSVPVS HHSSDLEMRP L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)