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AT5G51300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : splicing factor-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
splicing factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G09660.1); Has 986600 Blast hits to 958298 proteins in 35154 species: Archae - 20434; Bacteria - 569558; Metazoa - 210103; Fungi - 32531; Plants - 60683; Viruses - 65853; Other Eukaryotes - 27438 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5176eggNOG:KOG0119EMBL:AB023044EMBL:AK316802EMBL:AK317057EMBL:AY142629EMBL:CP002688
EnsemblPlants:AT5G51300EnsemblPlants:AT5G51300.1EnsemblPlants:AT5G51300.2EnsemblPlants:AT5G51300.3entrez:835204Gene3D:3.30.1370.10Gene3D:3.30.70.330
Gene3D:4.10.60.10GeneID:835204GO:GO:0000166GO:GO:0000398GO:GO:0005634GO:GO:0008270GO:GO:0008380
GO:GO:0045131Gramene:AT5G51300.1Gramene:AT5G51300.2Gramene:AT5G51300.3hmmpanther:PTHR11208hmmpanther:PTHR11208:SF45IntAct:Q9LU44
InterPro:IPR000504InterPro:IPR001878InterPro:IPR004087InterPro:IPR004088InterPro:IPR012677InterPro:IPR031150InterPro:IPR032570
KEGG:ath:AT5G51300KO:K13095OMA:QHMPPYGPANTHER:PTHR11208:SF45Pfam:PF00013Pfam:PF00076Pfam:PF16275
Pfscan:PS50084Pfscan:PS50102Pfscan:PS50158PhylomeDB:Q9LU44PROSITE:PS50084PROSITE:PS50102PROSITE:PS50158
Proteomes:UP000006548RefSeq:NP_001032055.1RefSeq:NP_199943.1RefSeq:NP_851169.1SMART:SM00322SMART:SM00343SMART:SM00360
SMR:Q9LU44STRING:3702.AT5G51300.1SUPFAM:SSF54791SUPFAM:SSF54928SUPFAM:SSF57756TAIR:AT5G51300UniGene:At.22924
UniProt:Q9LU44
Coordinates (TAIR10) chr5:-:20849881..20852295
Molecular Weight (calculated) 87055.00 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.80
Length 804 amino acids
Sequence (TAIR10)
(BLAST)
001: MESVEMNNPN SQTLDQPPPS SNGDTAPLAL DHMNPQNSES VALNGSSTPI PDTNGSSAKP ELLRPLLSEN GVSKTLSGND KDQSGGEEET TSRRKRRSRW
101: DPPPSESINN PSAEGGTDSG TGTRKRKSRW ADDEPRTQIQ LPDFMKDFTG GIEFDPEIQA LNSRLLEISR MLQSGMPLDD RPEGQRSPSP EPVYDNMGIR
201: INTREYRARE RLNRERQEII AQIIKKNPAF KPPADYRPPK LHKKLFIPMK EFPGYNFIGL IIGPRGNTQK RMERETGAKI VIRGKGSVKE GRHQQKKDLK
301: YDPSENEDLH VLVEAETQEA LEAAAGMVEK LLQPVDEVLN EHKRQQLREL ATLNGTIRDE EFCRLCGEPG HRQYACPSRT NTFKSDVLCK ICGDGGHPTI
401: DCPVKGTTGK KMDDEYQNFL AELGGTVPES SLKQSATLAL GPGSSGSNPP WANNAGNGAS AHPGLGSTPT KPPSKEYDET NLYIGFLPPM LEDDGLINLF
501: SSFGEIVMAK VIKDRVTGLS KGYGFVKYAD VQMANTAVQA MNGYRFEGRT LAVRIAGKSP PPIAPPGPPA PQPPTQGYPP SNQPPGAYPS QQYATGGYST
601: APVPWGPPVP SYSPYALPPP PPGSYHPVHG QHMPPYGMQY PPPPPHVTQA PPPGTTQNPS SSEPQQSFPP GVQADSGAAT SSIPPNVYGS SVTAMPGQPP
701: YMSYPSYYNA VPPPTPPAPA SSTDHSQNMG NMPWANNPSV STPDHSQGLV NAPWAPNPPM PPTVGYSQSM GNVPWAPKPP VQPPAENPSS VGESEYEKFM
801: AEMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)