suba logo
AT5G51260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAD superfamily, subfamily IIIB acid phosphatase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G25150.1); Has 906 Blast hits to 901 proteins in 278 species: Archae - 0; Bacteria - 491; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G51260-MONOMEReggNOG:ENOG410IISGeggNOG:ENOG410YBHHEMBL:AB023044EMBL:AK221577EMBL:BT024480EMBL:CP002688
EnsemblPlants:AT5G51260EnsemblPlants:AT5G51260.1entrez:835200Gene3D:3.40.50.1000GeneID:835200GO:GO:0003993Gramene:AT5G51260.1
hmmpanther:PTHR31284hmmpanther:PTHR31284:SF7HOGENOM:HOG000237598InterPro:IPR005519InterPro:IPR010028InterPro:IPR014403InterPro:IPR023214
KEGG:ath:AT5G51260OMA:NLSPWKTPfam:PF03767PhylomeDB:Q9LU48PIRSF:PIRSF002674Proteomes:UP000006548RefSeq:NP_199939.1
SMR:Q9LU48STRING:3702.AT5G51260.1SUPFAM:SSF56784TAIR:AT5G51260TIGRfam:TIGR01675TIGRFAMs:TIGR01675UniGene:At.29688
UniProt:Q9LU48
Coordinates (TAIR10) chr5:-:20832222..20833466
Molecular Weight (calculated) 29778.50 Da
IEP (calculated) 5.07
GRAVY (calculated) -0.28
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIYLIFLVV VSLFTSAFSD SILEYPSEIE SRHKKAAEED VNLHCTTWRF AAEMNNLAPW KTIPVECADY VKDYVMGKGY LTDLERVSEE ALIFARSIEF
101: SGDGKDIWIF DIDETLLSNL PYYIDHGFGL ELFDHSEFDK WVERGVAPAI APSLKLYQRV LDLGYKVFLL TGRKESHRLV TVENLINAGF QNWDKLILRS
201: PEEQHKMATL YKSEKRDEMV KEGYRIRGNS GDQWSDLLGT SMSQRSFKLA NPMYYIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)