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AT5G51170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.660
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:835191EC:3.1.4.-eggNOG:ENOG4111KT5eggNOG:KOG3102EMBL:AB023044EMBL:AY088702EMBL:BT004333
EMBL:BT005590EMBL:CP002688EnsemblPlants:AT5G51170EnsemblPlants:AT5G51170.1entrez:835191ExpressionAtlas:Q9LU57GeneID:835191
GO:GO:0004518GO:GO:0005634GO:GO:0006397GO:GO:0008380GO:GO:0034477Gramene:AT5G51170.1HAMAP:MF_03040
hmmpanther:PTHR13522HOGENOM:HOG000272712IntAct:Q9LU57InterPro:IPR027521OMA:AIQVHQIPANTHER:PTHR13522Pfam:PF09749
PhylomeDB:Q9LU57Proteomes:UP000006548RefSeq:NP_568753.1SMR:Q9LU57TAIR:AT5G51170UniGene:At.29692UniProt:Q9LU57
Coordinates (TAIR10) chr5:-:20793906..20795330
Molecular Weight (calculated) 31856.40 Da
IEP (calculated) 7.55
GRAVY (calculated) -0.18
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)