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AT5G51160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.732
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G10720.1); Has 23468 Blast hits to 11643 proteins in 579 species: Archae - 38; Bacteria - 1696; Metazoa - 12874; Fungi - 1168; Plants - 2550; Viruses - 45; Other Eukaryotes - 5097 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:AB023044EMBL:AK175167
EMBL:AK221321EMBL:BT012354EMBL:CP002688EnsemblPlants:AT5G51160
EnsemblPlants:AT5G51160.1entrez:835190Gene3D:1.25.40.20GeneID:835190
GO:GO:0016021Gramene:AT5G51160.1hmmpanther:PTHR24177hmmpanther:PTHR24177:SF14
HOGENOM:HOG000153115InterPro:IPR002110InterPro:IPR020683InterPro:IPR026961
KEGG:ath:AT5G51160OMA:PGGTWQDPfam:PF00023Pfam:PF12796
Pfam:PF13962Pfscan:PS50088Pfscan:PS50297PhylomeDB:Q9LU58
PROSITE:PS50088PROSITE:PS50297Proteomes:UP000006548RefSeq:NP_199929.1
SMART:SM00248SMR:Q9LU58STRING:3702.AT5G51160.1SUPFAM:SSF48403
TAIR:AT5G51160TMHMM:TMhelixUniGene:At.29692UniGene:At.29693
UniProt:Q9LU58
Coordinates (TAIR10) chr5:+:20792280..20793681
Molecular Weight (calculated) 48867.10 Da
IEP (calculated) 7.33
GRAVY (calculated) -0.02
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAFETHLPK EIVSDPLYNS FNPRSEEYVV AGKILRQRSV FDLDKNGFSP LHAAAAAGQV ETVRATLGVE KKLCRLKDRD GKTPLHVATM RGKIDVIREI
101: VASCVDCLED ETVQGQTALH LAVLHLEIEA VIAIVELITE TNRFDVLNKK DEQGNTALHL ATWRKNRQVI EVLVQAIPEE SRSFEVNAMN KMGLSAMDLL
201: VMFPSEAGDR EIYEKLIEAG AQRGRDIGTT NVERTTSTST CQERTMKSQS HKELVKYFTF KKHRDSPSEA RSALLVVASL VATATFQASL TPPGGTWQDS
301: SIPAVSQNTT NVNTTNQQAH TAGQSIMGTF NGVAFTLFVF FNTIGFSVSL SMLNILTLGF PLRFQLQICM IAMYFSHNTT MASIAPDHVK LYCILITSIL
401: AATTPGLMRL LENPIGMLAH FLDSRSQKIC SMISLSCKRF VT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)