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AT5G51110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcriptional coactivator/pterin dehydratase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1); Has 1849 Blast hits to 1849 proteins in 364 species: Archae - 43; Bacteria - 697; Metazoa - 0; Fungi - 2; Plants - 93; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWKJeggNOG:ENOG4111XUMEMBL:AB023044EMBL:AK226425EMBL:AY052253EMBL:AY143825EMBL:AY536640
EMBL:CP002688EnsemblPlants:AT5G51110EnsemblPlants:AT5G51110.1entrez:835185ExpressionAtlas:Q9LU63Gene3D:3.30.1360.20GeneID:835185
GO:GO:0006729GO:GO:0008124GO:GO:0009507Gramene:AT5G51110.1hmmpanther:PTHR12599hmmpanther:PTHR12599:SF8IntAct:Q9LU63
InterPro:IPR001533OMA:NGNTEHKPANTHER:PTHR12599Pfam:PF01329PhylomeDB:Q9LU63Proteomes:UP000006548RefSeq:NP_199924.1
SMR:Q9LU63STRING:3702.AT5G51110.1SUPFAM:SSF55248TAIR:AT5G51110UniGene:At.9685UniProt:Q9LU63
Coordinates (TAIR10) chr5:-:20778316..20779380
Molecular Weight (calculated) 23898.70 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.16
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATSSSPPC NISASSLLLR QPSRSILKVF GLLPPVSRNN RKLGRLTVTR SNLAQDFLGD FGARDPYPEE IASQFGDKVL GCQSTEHKIL IPNASVLSLS
101: QLQCSPVSSS QPPLSGDDAR TLLHKVLGWS IVDNEAGGLK IRCMWKVRDF GCGVELINRI HKVAEASGHY PSLHLESPTQ VRAELFTSSI GGLSMNDFIM
201: AAKIDDIKTS DLSPRKRAWA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)