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AT5G51100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Fe superoxide dismutase 2
Curator
Summary (TAIR10)
Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.
Computational
Description (TAIR10)
Fe superoxide dismutase 2 (FSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: response to UV; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 1 (TAIR:AT4G25100.5); Has 11522 Blast hits to 11521 proteins in 3361 species: Archae - 194; Bacteria - 8106; Metazoa - 433; Fungi - 799; Plants - 399; Viruses - 1; Other Eukaryotes - 1590 (source: NCBI BLink).
Protein Annotations
BioGrid:20428EC:1.15.1.1eggNOG:COG0605eggNOG:KOG0876EMBL:AB023044EMBL:AK228538EMBL:AY085077
EMBL:BT004073EMBL:BT005116EMBL:CP002688EMBL:Y12641EnsemblPlants:AT5G51100EnsemblPlants:AT5G51100.1entrez:835183
GeneID:835183Genevisible:Q9LU64GO:GO:0004784GO:GO:0009295GO:GO:0009411GO:GO:0009507GO:GO:0009534
GO:GO:0009579GO:GO:0019430GO:GO:0042644GO:GO:0046872GO:GO:0055114Gramene:AT5G51100.1gramene_pathway:1.15.1.1
gramene_pathway:DETOX1-PWYhmmpanther:PTHR11404hmmpanther:PTHR11404:SF24HOGENOM:HOG000013584InParanoid:Q9LU64IntAct:Q9LU64InterPro:IPR001189
InterPro:IPR019831InterPro:IPR019832InterPro:IPR019833KEGG:ath:AT5G51100KO:K04564OMA:YINTFMEPANTHER:PTHR11404
PaxDb:Q9LU64Pfam:PF00081Pfam:PF02777Pfam:Q9LU64PhylomeDB:Q9LU64PRIDE:Q9LU64PRINTS:PR01703
PRO:PR:Q9LU64PROSITE:PS00088ProteinModelPortal:Q9LU64Proteomes:UP000006548RefSeq:NP_199923.1scanprosite:PS00088SMR:Q9LU64
STRING:3702.AT5G51100.1SUPFAM:SSF46609SUPFAM:SSF54719TAIR:AT5G51100tair10-symbols:FSD2UniGene:At.212UniProt:Q9LU64
Coordinates (TAIR10) chr5:-:20773357..20775635
Molecular Weight (calculated) 34665.70 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.50
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)