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AT5G51070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Clp ATPase
Curator
Summary (TAIR10)
ATP-dependent Clp protease regulatory subunit
Computational
Description (TAIR10)
EARLY RESPONSIVE TO DEHYDRATION 1 (ERD1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to water deprivation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G51070-MONOMERBioGrid:20425EC:3.6.1.3eggNOG:COG0542eggNOG:KOG1051EMBL:AB017063EMBL:AB023044
EMBL:AY035112EMBL:AY133868EMBL:CP002688EMBL:D17582EnsemblPlants:AT5G51070EnsemblPlants:AT5G51070.1entrez:835180
Gene3D:1.10.1780.10Gene3D:3.40.50.300GeneID:835180Genevisible:P42762GO:GO:0005524GO:GO:0009507GO:GO:0009570
GO:GO:0009941GO:GO:0016887GO:GO:0019538GO:GO:0034214GO:GO:0042803Gramene:AT5G51070.1hmmpanther:PTHR11638
hmmpanther:PTHR11638:SF118HOGENOM:HOG000218210InParanoid:P42762IntAct:P42762InterPro:IPR001270InterPro:IPR003593InterPro:IPR003959
InterPro:IPR004176InterPro:IPR018368InterPro:IPR019489InterPro:IPR027417InterPro:IPR028299iPTMnet:P42762KEGG:ath:AT5G51070
OMA:FCVDLTMPaxDb:P42762Pfam:P42762Pfam:PF00004Pfam:PF02861Pfam:PF07724Pfam:PF10431
PhylomeDB:P42762PIR:JN0901PRIDE:P42762PRINTS:PR00300PRO:PR:P42762PROSITE:PS00870PROSITE:PS00871
ProteinModelPortal:P42762Proteomes:UP000006548RefSeq:NP_568750.1scanprosite:PS00870scanprosite:PS00871SMART:SM00382SMART:SM01086
SMR:P42762STRING:3702.AT5G51070.1SUPFAM:SSF52540SUPFAM:SSF81923TAIR:AT5G51070tair10-symbols:CLPDtair10-symbols:ERD1
tair10-symbols:SAG15UniGene:At.25346UniGene:At.69453UniProt:P42762
Coordinates (TAIR10) chr5:+:20764479..20768481
Molecular Weight (calculated) 103241.00 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.19
Length 945 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)