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AT5G51060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADPH/respiratory burst oxidase protein D
Curator
Summary (TAIR10)
RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.
Computational
Description (TAIR10)
ROOT HAIR DEFECTIVE 2 (RHD2); CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: Riboflavin synthase-like superfamily protein (TAIR:AT4G25090.1); Has 2388 Blast hits to 2271 proteins in 341 species: Archae - 10; Bacteria - 214; Metazoa - 694; Fungi - 757; Plants - 530; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G51060-MONOMERBioGrid:20424EC:1.11.1.-EC:1.6.3.-eggNOG:ENOG410XNZYeggNOG:KOG0039EMBL:AB017063
EMBL:AF055355EMBL:AK117159EMBL:AY452508EMBL:CP002688EnsemblPlants:AT5G51060EnsemblPlants:AT5G51060.1entrez:835179
Gene3D:1.10.238.10GeneID:835179Genevisible:O81210GO:GO:0004601GO:GO:0005509GO:GO:0005887GO:GO:0009060
GO:GO:0010053GO:GO:0016174GO:GO:0033198Gramene:AT5G51060.1hmmpanther:PTHR11972hmmpanther:PTHR11972:SF64HOGENOM:HOG000216670
InParanoid:O81210InterPro:IPR000778InterPro:IPR002048InterPro:IPR011992InterPro:IPR013112InterPro:IPR013121InterPro:IPR013130
InterPro:IPR013623InterPro:IPR017927InterPro:IPR017938InterPro:IPR018247iPTMnet:O81210KEGG:ath:AT5G51060KO:K13447
OMA:AKPNWRNPaxDb:O81210PeroxiBase:3284Pfam:O81210Pfam:PF01794Pfam:PF08022Pfam:PF08030
Pfam:PF08414Pfscan:PS50222Pfscan:PS51384PhylomeDB:O81210PRIDE:O81210PRINTS:PR00466PRO:PR:O81210
PROSITE:PS00018PROSITE:PS50222PROSITE:PS51384ProteinModelPortal:O81210Proteomes:UP000006548Reactome:R-ATH-209968RefSeq:NP_199919.1
scanprosite:PS00018SMR:O81210STRING:3702.AT5G51060.1SUPFAM:SSF47473SUPFAM:SSF52343SUPFAM:SSF63380TAIR:AT5G51060
tair10-symbols:ATRBOHCtair10-symbols:RBOHCtair10-symbols:RHD2TMHMM:TMhelixUniGene:At.29697UniProt:O81210
Coordinates (TAIR10) chr5:-:20757484..20762175
Molecular Weight (calculated) 102524.00 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.22
Length 905 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRVSFEVSG GYHSDAEAGN SGPMSGGQLP PIYKKPGNSR FTAENSQRTR TAPYVDLTVD VQDDTVSVHS LKMEGGSSVE ESPELTLLKR NRLEKKTTVV
101: KRLASVSHEL KRLTSVSGGI GGRKPPRPAK LDRTKSAASQ ALKGLKFISK TDGGAGWSAV EKRFNQITAT TGGLLLRTKF GECIGMTSKD FALELFDALA
201: RRRNITGEVI DGDQLKEFWE QINDQSFDSR LKTFFDMVDK DADGRLTEDE VREIISLSAS ANNLSTIQKR ADEYAALIME ELDPDNIGYI MLESLETLLL
301: QAATQSVITS TGERKNLSHM MSQRLKPTFN RNPLKRWYRG LRFFLLDNWQ RCWVIVLWFI VMAILFTYKY IQYRRSPVYP VMGDCVCMAK GAAETVKLNM
401: ALILLPVCRN TITWLRNKTR LGRVVPFDDN LNFHKVIAVG IIVGVTMHAG AHLACDFPRL LHATPEAYRP LRQFFGDEQP KSYWHFVNSV EGITGLVMVL
501: LMAIAFTLAT PWFRRGKLNY LPGPLKKLAS FNAFWYTHHL FVIVYILLVA HGYYLYLTRD WHNKTTWMYL VVPVVLYACE RLIRAFRSSI KAVTIRKVAV
601: YPGNVLAIHL SRPQNFKYKS GQYMFVNCAA VSPFEWHPFS ITSAPQDDYL SVHIRVLGDW TRALKGVFSE VCKPPPAGVS GLLRADMLHG ANNPDFPKVL
701: IDGPYGAPAQ DYKKYEVVLL VGLGIGATPM ISIVKDIVNN IKAKEQAQLN RMENGTSEPQ RSKKESFRTR RAYFYWVTRE QGSFDWFKNI MNEVAERDAN
801: RVIEMHNYCT SVYEEGDARS ALIHMLQSLN HAKNGVDIVS GTRVMSHFAK PNWRNVYKRI AMDHPNTKVG VFYCGAPALT KELRHLALDF THKTSTRFSF
901: HKENF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)