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AT5G50990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62890.1); Has 34988 Blast hits to 13414 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 109; Plants - 34373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB017063EMBL:CP002688EnsemblPlants:AT5G50990EnsemblPlants:AT5G50990.1entrez:835172
GeneID:835172Genevisible:Q9FI49GO:GO:0008270Gramene:AT5G50990.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF639HOGENOM:HOG000237569
InParanoid:Q9FI49InterPro:IPR002885InterPro:IPR032867iPTMnet:Q9FI49KEGG:ath:AT5G50990OMA:RIRFHRFPaxDb:Q9FI49
Pfam:PF01535Pfam:PF13041Pfam:PF14432Pfam:Q9FI49Pfscan:PS51375PhylomeDB:Q9FI49PRIDE:Q9FI49
PRO:PR:Q9FI49PROSITE:PS51375ProteinModelPortal:Q9FI49Proteomes:UP000006548RefSeq:NP_199912.2SMR:Q9FI49STRING:3702.AT5G50990.1
TAIR:AT5G50990TIGRfam:TIGR00756TIGRFAMs:TIGR00756TMHMM:TMhelixUniGene:At.65858UniProt:Q9FI49
Coordinates (TAIR10) chr5:+:20739453..20741281
Molecular Weight (calculated) 60039.90 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.11
Length 534 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRISINVSG IRRFCITSLS SSSASNLTDH GMLKQVLESC KAPSNSKCVL QAHAQIFKLG YGTYPSLLVS TVAAYRRCNR SYLARRLLLW FLSLSPGVCN
101: INLIIESLMK IGESGLAKKV LRNASDQNVI TWNLMIGGYV RNVQYEEALK ALKNMLSFTD IKPNKFSFAS SLAACARLGD LHHAKWVHSL MIDSGIELNA
201: ILSSALVDVY AKCGDIGTSR EVFYSVKRND VSIWNAMITG FATHGLATEA IRVFSEMEAE HVSPDSITFL GLLTTCSHCG LLEEGKEYFG LMSRRFSIQP
301: KLEHYGAMVD LLGRAGRVKE AYELIESMPI EPDVVIWRSL LSSSRTYKNP ELGEIAIQNL SKAKSGDYVL LSNIYSSTKK WESAQKVREL MSKEGIRKAK
401: GKSWLEFGGM IHRFKAGDTS HIETKAIYKV LEGLIQKTKS QGFVSDTDLV LMDVSEEEKE ENLNYHSEKL ALAYVILKSS PGTEIRIQKN IRMCSDCHNW
501: IKAVSKLLNR VIIMRDRIRF HRFEDGLCSC RDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)