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AT5G50915.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 2137 Blast hits to 2129 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 37; Plants - 2099; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVTTeggNOG:ENOG410YIH7EMBL:AB017063EMBL:AF428350
EMBL:AY057549EMBL:AY087602EMBL:AY113059EMBL:CP002688
EnsemblPlants:AT5G50915EnsemblPlants:AT5G50915.1EnsemblPlants:AT5G50915.2entrez:835164
Gene3D:4.10.280.10GeneID:835164Genevisible:Q93W88GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009739
Gramene:AT5G50915.1Gramene:AT5G50915.2hmmpanther:PTHR12565hmmpanther:PTHR12565:SF90
HOGENOM:HOG000242938InParanoid:Q93W88InterPro:IPR011598KEGG:ath:AT5G50915
OMA:SISPVVYPaxDb:Q93W88Pfam:PF00010Pfam:Q93W88
Pfscan:PS50888PhylomeDB:Q93W88PRIDE:Q93W88PRO:PR:Q93W88
PROSITE:PS50888ProteinModelPortal:Q93W88Proteomes:UP000006548RefSeq:NP_568745.1
RefSeq:NP_851163.1SMART:SM00353SMR:Q93W88STRING:3702.AT5G50915.1
SUPFAM:SSF47459TAIR:AT5G50915UniGene:At.23601UniProt:Q93W88
Coordinates (TAIR10) chr5:-:20710764..20712252
Molecular Weight (calculated) 31775.10 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.64
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQEEGEEREN FVDRSGFNNN NFCSFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)