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AT5G50850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15496452 (2005): nucleus
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transketolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 17839 Blast hits to 17830 proteins in 2804 species: Archae - 215; Bacteria - 11375; Metazoa - 619; Fungi - 227; Plants - 405; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G50850-MONOMERBioCyc:RETL1328306-WGS:GSTH-5057-MONOMERBioGrid:20403EC:1.2.4.1eggNOG:COG0022eggNOG:KOG0524EMBL:AB026637
EMBL:AY070728EMBL:BT000839EMBL:CP002688EMBL:U09137EnsemblPlants:AT5G50850EnsemblPlants:AT5G50850.1entrez:835157
Gene3D:3.40.50.920Gene3D:3.40.50.970GeneID:835157Genevisible:Q38799GO:GO:0004739GO:GO:0005730GO:GO:0005739
GO:GO:0005759GO:GO:0005774GO:GO:0006086GO:GO:0006096GO:GO:0042742GO:GO:0048046Gramene:AT5G50850.1
gramene_pathway:1.2.4.1gramene_pathway:PYRUVDEHYD-PWYhmmpanther:PTHR11624hmmpanther:PTHR11624:SF56HOGENOM:HOG000281450InParanoid:Q38799IntAct:Q38799
InterPro:IPR005475InterPro:IPR009014InterPro:IPR027110InterPro:IPR029061InterPro:IPR033247InterPro:IPR033248KEGG:00010+1.2.4.1
KEGG:00020+1.2.4.1KEGG:00620+1.2.4.1KEGG:ath:AT5G50850KO:K00162OMA:MAVPQIEPANTHER:PTHR11624PANTHER:PTHR11624:SF56
PaxDb:Q38799Pfam:PF02779Pfam:PF02780Pfam:Q38799PhylomeDB:Q38799PRIDE:Q38799PRO:PR:Q38799
ProteinModelPortal:Q38799Proteomes:UP000006548Reactome:R-ATH-70268RefSeq:NP_199898.1SMART:SM00861SMR:Q38799STRING:3702.AT5G50850.1
SUPFAM:SSF52518SUPFAM:SSF52922SWISS-2DPAGE:Q38799TAIR:AT5G50850tair10-symbols:MAB1UniGene:At.24270UniProt:Q38799
Coordinates (TAIR10) chr5:+:20689671..20692976
Molecular Weight (calculated) 39178.00 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.00
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)