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AT5G50830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4984 Blast hits to 3288 proteins in 342 species: Archae - 12; Bacteria - 257; Metazoa - 1366; Fungi - 452; Plants - 199; Viruses - 77; Other Eukaryotes - 2621 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JI8TeggNOG:ENOG41115CPEMBL:AB025617EMBL:BT004253EMBL:BT005516EMBL:CP002688EnsemblPlants:AT5G50830
EnsemblPlants:AT5G50830.1entrez:835155ExpressionAtlas:Q9FGQ0GeneID:835155Gramene:AT5G50830.1HOGENOM:HOG000129981ncoils:Coil
Proteomes:UP000006548RefSeq:NP_199896.1STRING:3702.AT5G50830.2TAIR:AT5G50830UniGene:At.29710UniProt:Q9FGQ0
Coordinates (TAIR10) chr5:+:20683452..20684549
Molecular Weight (calculated) 31220.20 Da
IEP (calculated) 4.86
GRAVY (calculated) -1.07
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCGGSRLGG VATTRAEEGG VVPLPAGIRP LLRRRLEEMK KRSHAGVLKG SQTLSKKELL RHNSSEDGED TEENDGSLKA SAKVAPAPDH NVEEKKEVIY
101: EKIPSKDDVK EVKEEVVVNK QEEDNHHQDV VEKQEEENKE VVKKQEEENH DDDVVVINVK KEGDDGKNHD VDEGSINNFD ERMIGPGSPS FRVYCVDVPS
201: DDDDEEKDVE DARKSMETES VTTEIKEDGS IVKKEKKERR GKRFGIALPR KYLANVTAPC YAGGGCMGNT HSRLVQEKSS Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)