AT5G50340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases; FUNCTIONS IN: in 7 functions; INVOLVED IN: DNA repair, proteolysis, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair protein RadA (InterPro:IPR004504), DNA helicase, DnaB-like, C-terminal (InterPro:IPR007694), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 8098 Blast hits to 8084 proteins in 2420 species: Archae - 172; Bacteria - 6133; Metazoa - 8; Fungi - 0; Plants - 82; Viruses - 9; Other Eukaryotes - 1694 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20491635..20495830 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63094.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 587 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLIADMRCFR CFYTRAHSLL LLRSSNPVTV PISPVRFRLR LRRLSSSPVA SVFDLHSSNQ DANSNREDKD TKIGFSDDKS RKSGSNPPRW NPGEVVMNKS 101: KKGKSKTVWV CESCGHSEGQ WWGSCRACHK VGTMKRFSEG SESSASGGGG NGTGLGFTEG KGLSWLPEQA TVQPHRLTDV IHGITQQQWR ISLPGLFGNE 201: VARVLGGGLA PGSLILIGGD PGIGKSTLLL QIASIIAEGS ELAEPAPVLY ISGEESVEQI GSRADRMRIQ TEELYLFSSS DLQDILNKAH RLSPRALIID 301: SIQTVYLKDV TGSAGGLTQV KECTSTLLRF AKKSNIPVFL VGHVTKAGDI AGPRVLEHIV DVVLYLEGEE SSTYRLLRSV KNRFGSTDEL GVFEMANSGL 401: EVVSNPSGIY LSQQNPDSDV LAGLAVAVVM DGSRSFLIEV QALCSPGSTV SRHVNGVQAS RADMIIAVLM KQAGLRIQEN GIFLNVANGM ALSETAGDLA 501: IAAAICSSFL EFPIPHGVAF IGEIGLGGEV RTVPRMEKRV STVAKLGFNK CVVPKSVEES LKALSLKEIE IIGCKNLKEL INAVFKG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)