AT5G50280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1006 (EMB1006); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20459238..20461504 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82177.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 723 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMASSSLAT QSFFSSFPLS HRLHFPVPYL LLRSSFFRKP LSLSATSPSS SSSSPSIFLS CFDDALPDKI QQPENSTINS EESECEEEDD EEGDDFTDPI 101: LKFFKSRTLT SESTADPARE SKFSLQKNRR TSWHLAPDFA DPETEIESKP EESVFVTNQQ TLGVHIPFES GVAREILELA KNLKENQTLG EMLSGFERRV 201: SDTECVEALV MMGESGFVKS CLYFYEWMSL QEPSLASPRA CSVLFTLLGR ERMADYILLL LSNLPDKEEF RDVRLYNAAI SGLSASQRYD DAWEVYEAMD 301: KINVYPDNVT CAILITTLRK AGRSAKEVWE IFEKMSEKGV KWSQDVFGGL VKSFCDEGLK EEALVIQTEM EKKGIRSNTI VYNTLMDAYN KSNHIEEVEG 401: LFTEMRDKGL KPSAATYNIL MDAYARRMQP DIVETLLREM EDLGLEPNVK SYTCLISAYG RTKKMSDMAA DAFLRMKKVG LKPSSHSYTA LIHAYSVSGW 501: HEKAYASFEE MCKEGIKPSV ETYTSVLDAF RRSGDTGKLM EIWKLMLREK IKGTRITYNT LLDGFAKQGL YIEARDVVSE FSKMGLQPSV MTYNMLMNAY 601: ARGGQDAKLP QLLKEMAALN LKPDSITYST MIYAFVRVRD FKRAFFYHKM MVKSGQVPDP RSYEKLRAIL EDKAKTKNRK DKTAILGIIN SKFGRVKAKT 701: KGKKDEFWKY KTNRTTSPGR HRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)