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AT5G50230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Autophagy-related protein 16 (InterPro:IPR013923), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 76401 Blast hits to 35303 proteins in 1111 species: Archae - 133; Bacteria - 9405; Metazoa - 31134; Fungi - 15838; Plants - 8951; Viruses - 22; Other Eukaryotes - 10918 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQYAeggNOG:KOG0288EMBL:AB024031EMBL:BT011244
EMBL:BT020329EMBL:CP002688EnsemblPlants:AT5G50230EnsemblPlants:AT5G50230.1
entrez:835088Gene3D:2.130.10.10GeneID:835088Genevisible:Q6NNP0
GO:GO:0006914GO:GO:0015031Gramene:AT5G50230.1hmmpanther:PTHR19878
InterPro:IPR001680InterPro:IPR013923InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT5G50230KO:K17890
ncoils:CoilOMA:YVFDAHDPaxDb:Q6NNP0Pfam:PF00400
Pfam:PF08614Pfam:PF13360Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q6NNP0PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:Q6NNP0Proteomes:UP000006548Reactome:R-ATH-1632852
RefSeq:NP_199834.2scanprosite:PS00678SMART:SM00320SMR:Q6NNP0
STRING:3702.AT5G50230.1SUPFAM:SSF50978TAIR:AT5G50230UniGene:At.29744
UniProt:Q6NNP0
Coordinates (TAIR10) chr5:-:20448632..20450855
Molecular Weight (calculated) 56429.70 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.38
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)