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AT5G50170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.740
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2 calcium/lipid-binding and GRAM domain containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2 calcium/lipid-binding and GRAM domain containing protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT1G03370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRAFeggNOG:ENOG410Y9YWEMBL:AB024031EMBL:AY056116
EMBL:BT009696EMBL:CP002688EnsemblPlants:AT5G50170EnsemblPlants:AT5G50170.1
entrez:835082Gene3D:2.60.40.150GeneID:835082Genevisible:Q9FGS8
GO:GO:0016021Gramene:AT5G50170.1hmmpanther:PTHR10774hmmpanther:PTHR10774:SF94
HOGENOM:HOG000029734InParanoid:Q9FGS8InterPro:IPR000008InterPro:IPR004182
InterPro:IPR031968iPTMnet:Q9FGS8KEGG:ath:AT5G50170ncoils:Coil
OMA:RILRNTWPaxDb:Q9FGS8Pfam:PF00168Pfam:PF02893
Pfam:PF16016Pfam:Q9FGS8Pfscan:PS50004PhylomeDB:Q9FGS8
PRIDE:Q9FGS8PRO:PR:Q9FGS8PROSITE:PS50004PROSITE:PS51778
ProteinModelPortal:Q9FGS8Proteomes:UP000006548RefSeq:NP_199828.1SMART:SM00239
SMART:SM00568SMR:Q9FGS8SUPFAM:SSF49562TAIR:AT5G50170
UniGene:At.26376UniProt:Q9FGS8
Coordinates (TAIR10) chr5:+:20421150..20425524
Molecular Weight (calculated) 115865.00 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.26
Length 1027 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRLYVYILQA KDLPAKETFA KLHVGRHKSK TRVARDTSSP IWNEEFVFRI SDVDEGDDVV VSILHHEQQD HQSIVSTGLI GKVRIPLTSV AAEENQTLLP
0101: TWFVIEKPSD GKFVNIECGK ILLSLSLQGK WESTSGEKVL NDKQDIINLE GVKELEGSPK DLISSRDGKR RKHHDGKHIM KNIVNHIDKL FHKKEEISKR
0201: LHDESSVGQS VNSNYEDATD QCSSSATCTG FEEGLDLMQS SDSEREEMPE NLTGGVLVDQ KYLVSPCELN KFLFTPSSQF RKELAELQGL SDVQEGPWTM
0301: MQEDTPRLTR VVTYMRAATK MVKAVKATEN QVYRKASGKQ FAVFVSVSTP DVPYGNTFKI ELLYKILPET EPTAGGEASR LIISWGIQFS QSTIMKGMIE
0401: GGARQGLKES FEQFSNLLAK TYKTLDPAVV LDKEQVIATV QSEPKTDLKS AFLYFWSSSV ICAVLLSVYV VVHMLHCEPS KIQGFEFYGL DLPDSFGELF
0501: SSGILVLLLE RVYIMTVHFV QARLHRGRDQ GVKANGKGWI LTIALIKGTN LASVEATELF DPYVVFTCNG KTRTSSVKLQ AQDPQWNEVI EFDAMEEPPS
0601: VLDVEVFDFD GPFDQGASLG HAEINFLKHT ADELADLSVA LVGNHAQASQ SKLQLRIFLE NKNGVETMKD YLSKVEKEVG KKLNIRSPQK NSAFQKLFGL
0701: PHEEFLLKEY TCYLKRKLPV QGKLFLSARI VAFYSNVFGH KTKFYFLWED IDDIQVLPPT FASLGSPLLL IILKKNRGLD AKHGAKSQDD EGRLSFYFQS
0801: FVSFDATSRT IMALWKTRTL SVDHRAQIVE EDQDVADPFL LPEAVTVVSD ADALMMSKVY TCDLPCDVEL VMKIFGGGEL ERKIMEKSGC LSYASTTWES
0901: KKPGVYERRL SYKYNHYVSV FGGGVTCAQQ KSPAPNDEGW ILNEIVALHD VPFGDHFRVH IRYEVKKAGV DCKTSKCEVY LKIRWLKTIK FEQRISKSIM
1001: EKFRNRFKVI FDLFQKESVA NSSLTLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)