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AT5G50100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.902
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative thiol-disulphide oxidoreductase DCC
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative thiol-disulphide oxidoreductase DCC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336), Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20320DNASU:835074eggNOG:COG3011eggNOG:ENOG410IW9HEMBL:AB026650EMBL:AY062766EMBL:AY081637
EMBL:AY087459EMBL:CP002688EnsemblPlants:AT5G50100EnsemblPlants:AT5G50100.1entrez:835074GeneID:835074Genevisible:Q8W485
GO:GO:0005739Gramene:AT5G50100.1hmmpanther:PTHR34290hmmpanther:PTHR34290:SF2HOGENOM:HOG000000067InParanoid:Q8W485IntAct:Q8W485
InterPro:IPR007263KEGG:ath:AT5G50100OMA:ITKFEPIPaxDb:Q8W485Pfam:PF04134Pfam:Q8W485PhylomeDB:Q8W485
PRIDE:Q8W485PRO:PR:Q8W485ProteinModelPortal:Q8W485Proteomes:UP000006548RefSeq:NP_568719.1STRING:3702.AT5G50100.1TAIR:AT5G50100
UniGene:At.27238UniProt:Q8W485
Coordinates (TAIR10) chr5:+:20371916..20373172
Molecular Weight (calculated) 24431.40 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.56
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRGAVAAA ASTIWKHRRN PSLRSLSRHF NPNFNHRIIP TGFKYQVRAI QGTSTDPVIT PLKNREEPKP QNWKIKMLYD GDCPLCMREV NMLMERNEKH
101: GTIKFVDISS NDYSPEDNQG LDYKTVMGQI HAIQSDGNVV KGVEAFRRLY EEVGLGWVYT ITKFEPIGKL ADVVYDVWAK YRLQVTGRPS IEAILEARKK
201: DKVETCGESK NCKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)