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AT5G49980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.970
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : auxin F-box protein 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin F-box protein 5 (AFB5); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G24390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20308eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AB024032EMBL:AK221208EMBL:AY056431EMBL:AY139774
EMBL:BT004536EMBL:CP002688EnsemblPlants:AT5G49980EnsemblPlants:AT5G49980.1entrez:835062Gene3D:3.80.10.10GeneID:835062
Genevisible:Q9LTX2GO:GO:0000822GO:GO:0005634GO:GO:0009734GO:GO:0010011GO:GO:0016567GO:GO:0019005
Gramene:AT5G49980.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF430HOGENOM:HOG000239805InParanoid:Q9LTX2IntAct:Q9LTX2InterPro:IPR001810
InterPro:IPR006553InterPro:IPR032675iPTMnet:Q9LTX2KEGG:ath:AT5G49980OMA:GGRWAPPPaxDb:Q9LTX2Pfam:Q9LTX2
PhylomeDB:Q9LTX2PRIDE:Q9LTX2PRO:PR:Q9LTX2ProteinModelPortal:Q9LTX2Proteomes:UP000006548RefSeq:NP_568718.1SMART:SM00367
SMR:Q9LTX2STRING:3702.AT5G49980.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G49980tair10-symbols:AFB5UniGene:At.22898
UniGene:At.75026UniPathway:UPA00143UniProt:Q9LTX2
Coordinates (TAIR10) chr5:-:20334420..20336531
Molecular Weight (calculated) 69320.30 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.11
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)