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AT5G49820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.874
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function, DUF647
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 1879 (EMB1879); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT2G31190.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20291eggNOG:ENOG410XU74eggNOG:KOG4249EMBL:AB025612EMBL:AY059766EMBL:AY142582EMBL:CP002688
EnsemblPlants:AT5G49820EnsemblPlants:AT5G49820.1entrez:835045GeneID:835045Genevisible:Q93YU2Gramene:AT5G49820.1hmmpanther:PTHR12770
hmmpanther:PTHR12770:SF20HOGENOM:HOG000030033InParanoid:Q93YU2IntAct:Q93YU2InterPro:IPR006968KEGG:ath:AT5G49820OMA:QGWRMSE
PANTHER:PTHR12770PaxDb:Q93YU2Pfam:PF04884Pfam:Q93YU2PhylomeDB:Q93YU2PRIDE:Q93YU2PRO:PR:Q93YU2
Proteomes:UP000006548RefSeq:NP_568713.1STRING:3702.AT5G49820.1TAIR:AT5G49820tair10-symbols:EMB1879tair10-symbols:RUS6UniGene:At.21512
UniProt:Q93YU2
Coordinates (TAIR10) chr5:-:20246753..20249432
Molecular Weight (calculated) 54631.40 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.16
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSVKLTHHS PPDTIASDSV RLLSRETLRI SASLASPPVD DLPPHSPPPP DSQFLHSTLR LICCEEIDGR RFKYVAESDG SGRFKKNSVR AISLESPQTP
101: FDEVGSFLRS YVVPEGFPGS VNESYVPYMT WRALKHFFGG AMGVFTTQTL LNSVGASRNS SASAAVAINW ILKDGAGRVG KMLFARQGKK FDYDLKQLRF
201: AGDLLMELGA GVELATAAVP HLFLPLACAA NVVKNVAAVT STSTRTPIYK AFAKGENIGD VTAKGECVGN IADLMGTGFS ILISKRNPSL VTTFGLLSCG
301: YLMSSYQEVR SVVLHTLNRA RFTVAVESFL KTGRVPSLQE GNIQEKIFTF PWVDDRPVML GARFKDAFQD PSTYMAVKPF FDKERYMVTY SPTKGKVYAL
401: LKHQANSDDI LKAAFHAHVL LHFMNQSKDG NPRSVEQLDP AFAPTEYELE SRIAESCEMV STSYGVFKSR AAEQGWRMSE SLLNPGRARL CHVKEGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)