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AT5G49800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.851
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); Has 197 Blast hits to 196 proteins in 72 species: Archae - 0; Bacteria - 22; Metazoa - 96; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEV2eggNOG:ENOG410Y1XYEMBL:BT020476EMBL:CP002688
EnsemblPlants:AT5G49800EnsemblPlants:AT5G49800.1entrez:835043Gene3D:3.30.530.20
GeneID:835043GO:GO:0008289Gramene:AT5G49800.1hmmpanther:PTHR19308
hmmpanther:PTHR19308:SF14HOGENOM:HOG000243738InterPro:IPR002913InterPro:IPR023393
KEGG:ath:AT5G49800OMA:FASESCIPfam:PF01852Pfscan:PS50848
PhylomeDB:Q5HZ48PROSITE:PS50848Proteomes:UP000006548RefSeq:NP_199791.2
SUPFAM:SSF55961TAIR:AT5G49800UniGene:At.29767UniProt:Q5HZ48
Coordinates (TAIR10) chr5:-:20234771..20236135
Molecular Weight (calculated) 27426.80 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.36
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGPVPSSRS WSVSEESLRR YVRFASESCI QELLSSSEAG RFGNASNGWK MVRHDSNGVE ISKRDSGSLH AFRSRRILTS VSPEQFITVA NAIDAAKQWE
101: GDLVEATHIR DIDENLSVIR LRFGENSKPL FRNREFIIYE RRETMQDGTL VVAVASLPKE MAEGLEPTEK KKNNYIRGFL VESGWVLEKL EDTSCMITYV
201: VQLDPAGWLP KCFVNRLNTK LVMIIDNLRK VAQAYLPSFP PP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)