AT5G49750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.642 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G49760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20210878..20213734 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54778.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MICSNSTLCK LSCLHVLKAR QFSFIYLTCV HHLLFHRSFF DTIKSKGSEK RFFVDLTMSS RIRTCMLLIL FFFQKCYVSA LTNVFDASAL RGMKNEWTRS 101: PKGWEGSDPC GTNWVGITCT NDRVVSISLV NHNLEGTLSE YILALSELEI LDLSFNIGLT GPLPSNIGDL KKLKNLILVG CGLSGQIPDS IGSLEQIINL 201: SLNLNKFSGT IPASIGRLSK LDWFDIAENQ IEGELPISNG TSSPGLDMLT QTQHFHFGKN KLSGHIPEKL FNSNMSLIHV LFNNNQFTGK IPESLSLVTT 301: LLVLRLDTNR LSGDIPPSLN NLTSLNQLHL CNNKFTGSLP NLASLTDLDE IDVSNNTLEF SLVPSWIVSL RNLTSIRMEG IQLIGPVPIS FFSLIRLQSV 401: NLKRNWINGT LDFGTNYSKQ LELVSLRYNN ITGYKQAANE HIKVILANNP VCGEVGNKPS FCSAIKHSSS FSTLQTIKDL FKKFIYNVDS VAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)