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AT5G49720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.333
plasma membrane 0.333
cytosol 0.333
ASURE: cytosol,golgi,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16284310 (2005): endoplasmic reticulum
  • PMID:16284310 (2005): plant-type vacuole
  • PMID:10899980 (2000): cytosol cell plate
  • PMID:10899980 (2000): plasma membrane
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase 9A1
Curator
Summary (TAIR10)
Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1.
Computational
Description (TAIR10)
glycosyl hydrolase 9A1 (GH9A1); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: in 6 processes; LOCATED IN: Golgi apparatus, plasma membrane, cell plate, early endosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9A3 (TAIR:AT4G24260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-2367BioGrid:20281CAZy:GH9EC:3.2.1.4eggNOG:ENOG410IE9YeggNOG:ENOG410XP0HEMBL:AB025613
EMBL:AF073875EMBL:AF074092EMBL:AF074375EMBL:AK221941EMBL:AK222193EMBL:AY037218EMBL:AY086165
EMBL:BT002221EMBL:CP002688EMBL:U37702EnsemblPlants:AT5G49720EnsemblPlants:AT5G49720.1entrez:835035Gene3D:1.50.10.10
GeneID:835035Genevisible:Q38890GO:GO:0005768GO:GO:0005769GO:GO:0005794GO:GO:0005802GO:GO:0005886
GO:GO:0008810GO:GO:0009504GO:GO:0009735GO:GO:0009826GO:GO:0016021GO:GO:0030244GO:GO:0030245
GO:GO:0042538GO:GO:0043622GO:GO:0048367GO:GO:0071555Gramene:AT5G49720.1gramene_pathway:3.2.1.4gramene_pathway:PWY-1001
hmmpanther:PTHR22298hmmpanther:PTHR22298:SF36HOGENOM:HOG000021033InParanoid:Q38890InterPro:IPR001701InterPro:IPR008928InterPro:IPR012341
InterPro:IPR018221InterPro:IPR033126iPTMnet:Q38890KEGG:00500+3.2.1.4KEGG:ath:AT5G49720OMA:EFVWGSSPaxDb:Q38890
Pfam:PF00759Pfam:Q38890PhylomeDB:Q38890PIR:S71215PRIDE:Q38890PRO:PR:Q38890PROSITE:PS00592
PROSITE:PS00698ProteinModelPortal:Q38890Proteomes:UP000006548RefSeq:NP_199783.1scanprosite:PS00592scanprosite:PS00698SMR:Q38890
STRING:3702.AT5G49720.1SUPFAM:SSF48208SwissPalm:Q38890TAIR:AT5G49720tair10-symbols:ATGH9A1tair10-symbols:DECtair10-symbols:GH9A1
tair10-symbols:IRX2tair10-symbols:KORtair10-symbols:KOR1tair10-symbols:RSW2tair10-symbols:TSD1TMHMM:TMhelixUniGene:At.21098
UniGene:At.23416UniProt:Q38890
Coordinates (TAIR10) chr5:-:20197765..20200168
Molecular Weight (calculated) 69194.90 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.44
Length 621 amino acids
Sequence (TAIR10)
(BLAST)
001: MYGRDPWGGP LEINTADSAT DDDRSRNLND LDRAALSRPL DETQQSWLLG PTEQKKKKYV DLGCIIVSRK IFVWTVGTLV AAALLAGFIT LIVKTVPRHH
101: PKTPPPDNYT IALHKALKFF NAQKSGKLPK HNNVSWRGNS GLQDGKGETG SFYKDLVGGY YDAGDAIKFN FPMAYAMTML SWSVIEYSAK YEAAGELTHV
201: KELIKWGTDY FLKTFNSTAD SIDDLVSQVG SGNTDDGNTD PNDHYCWMRP EDMDYKRPVT TCNGGCSDLA AEMAAALASA SIVFKDNKEY SKKLVHGAKV
301: VYQFGRTRRG RYSAGTAESS KFYNSSMYWD EFIWGGAWMY YATGNVTYLN LITQPTMAKH AGAFWGGPYY GVFSWDNKLA GAQLLLSRLR LFLSPGYPYE
401: EILRTFHNQT SIVMCSYLPI FNKFNRTNGG LIELNHGAPQ PLQYSVNAAF LATLYSDYLD AADTPGWYCG PNFYSTSVLR DFARSQIDYI LGKNPRKMSY
501: VVGFGTKYPR HVHHRGASIP KNKVKYNCKG GWKWRDSKKP NPNTIEGAMV AGPDKRDGYR DVRMNYNYTE PTLAGNAGLV AALVALSGEE EATGKIDKNT
601: IFSAVPPLFP TPPPPPAPWK P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)