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AT5G49700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted AT-hook DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Predicted AT-hook DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT1G14490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHMXeggNOG:ENOG410YGVKEMBL:AB025613EMBL:AB493783
EMBL:BR000353EMBL:CP002688EnsemblPlants:AT5G49700EnsemblPlants:AT5G49700.1
entrez:835033GeneID:835033Genevisible:Q9LTA2GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT5G49700.1
hmmpanther:PTHR31100hmmpanther:PTHR31100:SF1HOGENOM:HOG000239043InterPro:IPR005175
InterPro:IPR014476KEGG:ath:AT5G49700OMA:GSDVIWAPaxDb:Q9LTA2
Pfam:PF03479Pfam:Q9LTA2Pfscan:PS51742PhylomeDB:Q9LTA2
PIRSF:PIRSF016021PRO:PR:Q9LTA2PROSITE:PS51742ProteinModelPortal:Q9LTA2
Proteomes:UP000006548RefSeq:NP_199781.1SUPFAM:SSF117856TAIR:AT5G49700
UniGene:At.29772UniProt:Q9LTA2
Coordinates (TAIR10) chr5:+:20192599..20193429
Molecular Weight (calculated) 29391.60 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.44
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)