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AT5G49660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G09970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G49660-MONOMEReggNOG:COG4886eggNOG:ENOG410IGXTEMBL:AB025613EMBL:AB025627EMBL:CP002688EMBL:FJ708796
EnsemblPlants:AT5G49660EnsemblPlants:AT5G49660.1entrez:835028Gene3D:3.80.10.10GeneID:835028GO:GO:0004674GO:GO:0005524
GO:GO:0010051GO:GO:0016021GO:GO:0017046GO:GO:0042277GO:GO:1902025Gramene:AT5G49660.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF224InterPro:IPR000719InterPro:IPR001611InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009InterPro:IPR013210
InterPro:IPR017441InterPro:IPR032675KEGG:ath:AT5G49660ncoils:CoilOMA:SYDVKSFPfam:PF00069Pfam:PF08263
Pfam:PF13855Pfscan:PS50011PhylomeDB:Q9FGL5PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548
RefSeq:NP_199777.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMART:SM00369SMR:Q9FGL5STRING:3702.AT5G49660.1
SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT5G49660TMHMM:TMhelixUniGene:At.21895UniProt:Q9FGL5
Coordinates (TAIR10) chr5:-:20161401..20164534
Molecular Weight (calculated) 107285.00 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.07
Length 966 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLKNFPFFV LFFFFCFNSN QSWGLMSSNQ QPQFFKLMKN SLFGDALSTW NVYDVGTNYC NFTGVRCDGQ GLVTDLDLSG LSLSGIFPDG VCSYFPNLRV
101: LRLSHNHLNK SSSFLNTIPN CSLLRDLNMS SVYLKGTLPD FSQMKSLRVI DMSWNHFTGS FPLSIFNLTD LEYLNFNENP ELDLWTLPDS VSKLTKLTHM
201: LLMTCMLHGN IPRSIGNLTS LVDLELSGNF LSGEIPKEIG NLSNLRQLEL YYNYHLTGSI PEEIGNLKNL TDIDISVSRL TGSIPDSICS LPNLRVLQLY
301: NNSLTGEIPK SLGNSKTLKI LSLYDNYLTG ELPPNLGSSS PMIALDVSEN RLSGPLPAHV CKSGKLLYFL VLQNRFTGSI PETYGSCKTL IRFRVASNRL
401: VGTIPQGVMS LPHVSIIDLA YNSLSGPIPN AIGNAWNLSE LFMQSNRISG VIPHELSHST NLVKLDLSNN QLSGPIPSEV GRLRKLNLLV LQGNHLDSSI
501: PDSLSNLKSL NVLDLSSNLL TGRIPENLSE LLPTSINFSS NRLSGPIPVS LIRGGLVESF SDNPNLCIPP TAGSSDLKFP MCQEPHGKKK LSSIWAILVS
601: VFILVLGVIM FYLRQRMSKN RAVIEQDETL ASSFFSYDVK SFHRISFDQR EILESLVDKN IVGHGGSGTV YRVELKSGEV VAVKKLWSQS NKDSASEDKM
701: HLNKELKTEV ETLGSIRHKN IVKLFSYFSS LDCSLLVYEY MPNGNLWDAL HKGFVHLEWR TRHQIAVGVA QGLAYLHHDL SPPIIHRDIK STNILLDVNY
801: QPKVADFGIA KVLQARGKDS TTTVMAGTYG YLAPEYAYSS KATIKCDVYS FGVVLMELIT GKKPVDSCFG ENKNIVNWVS TKIDTKEGLI ETLDKRLSES
901: SKADMINALR VAIRCTSRTP TIRPTMNEVV QLLIDATPQG GPDMTSKPTT KIKDSIVSDH LTQTRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)