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AT5G49620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 78
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB023033EMBL:AY519635
EMBL:BT026076EMBL:CP002688EnsemblPlants:AT5G49620EnsemblPlants:AT5G49620.1
entrez:835024ExpressionAtlas:Q9FGY3Gene3D:1.10.10.60GeneID:835024
GO:GO:0003677Gramene:AT5G49620.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF623
HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9FGY3PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_199773.1SMART:SM00717SMR:Q9FGY3
STRING:3702.AT5G49620.2SUPFAM:SSF46689TAIR:AT5G49620tair10-symbols:AtMYB78
tair10-symbols:MYB78UniGene:At.9662UniProt:Q9FGY3
Coordinates (TAIR10) chr5:-:20137491..20139384
Molecular Weight (calculated) 35502.60 Da
IEP (calculated) 5.25
GRAVY (calculated) -0.75
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)