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AT5G49555.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD/NAD(P)-binding oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD/NAD(P)-binding oxidoreductase family protein; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: carotenoid isomerase (TAIR:AT1G06820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1233eggNOG:KOG4254EMBL:CP002688EnsemblPlants:AT5G49555EnsemblPlants:AT5G49555.1entrez:835017Gene3D:3.40.50.720
GeneID:835017GO:GO:0005507GO:GO:0005739GO:GO:0016491Gramene:AT5G49555.1InParanoid:F4K658InterPro:IPR002937
InterPro:IPR016040InterPro:IPR023753iPTMnet:F4K658KEGG:ath:AT5G49555OMA:IQYTPYKPaxDb:F4K658Pfam:PF01593
PRIDE:F4K658ProteinModelPortal:F4K658Proteomes:UP000006548RefSeq:NP_568712.1SMR:F4K658STRING:3702.AT5G49555.1SUPFAM:SSF51905
TAIR:AT5G49555UniGene:At.28390UniGene:At.29779UniProt:F4K658
Coordinates (TAIR10) chr5:-:20107411..20110602
Molecular Weight (calculated) 60493.20 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.17
Length 556 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRRSFSTLP KKKWDAVVIG GGHNGLTAAA YLARGGLSVA VLERRHVIGG AAVTEEIVPG FKFSRCSYLQ GLLRPCIIRE LELGRHGLKL LKRSPSSFTP
101: CLDGRYLLLG PDQDLNHSEI SKFSKHDADA YPRYEKQLER FCGFMDPLLD STPPESLQSA SSFNDKLSNK MYKSAFWARC LRQAVSLGHK DMVAFMDLLL
201: APASKVLNNW FESDVLKASL ATDAVIGSTA SVHTPGSGYV LLHHVMGETD GEKGIWSYVE GGMGSVSMAI ANAAKEAGAE IFTNAEVSEI LTEDSSIVKG
301: VLLADGTRVE SSAILSNATP YRTYVELVPT NVLPENFVSA IKNSDYSSAT TKINLAVDKL PQFQCCNTNH SGPGPEHFGT IHIGAESMDE VHSACHDSEN
401: GLPSRRPVIE MTIPSTLDNT ISPPGKHVIN LFIQYTPYKP SDGSWEDPTY REAFAQRCFK LIDEYAPGFS SSIISYDMLT PPDLEREIGL TGGNIFHGAM
501: GLDSLFLMRP VKGWSNYRSP LKGLYLCGSG AHPGGGVMGA PGRNAAHVVL QDLKRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)