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AT5G49550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.817
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Biogenesis of lysosome-related organelles complex-1, subunit 2 (InterPro:IPR019269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20262eggNOG:COG1233eggNOG:KOG4254EMBL:AB023033
EMBL:AK220691EMBL:AY087067EMBL:CP002688EnsemblPlants:AT5G49550
EnsemblPlants:AT5G49550.1entrez:835016GeneID:835016Genevisible:F4K657
GO:GO:0005768GO:GO:0031083Gramene:AT5G49550.1HOGENOM:HOG000238855
InParanoid:F4K657IntAct:F4K657InterPro:IPR019269KEGG:ath:AT5G49550
KO:K16750OMA:LTIFVEQPaxDb:F4K657Pfam:F4K657
Pfam:PF10046PRIDE:F4K657PRO:PR:F4K657Proteomes:UP000006548
RefSeq:NP_568711.1STRING:3702.AT5G49550.1TAIR:AT5G49550tair10-symbols:BLOS2
UniGene:At.29779UniProt:F4K657
Coordinates (TAIR10) chr5:-:20106702..20107156
Molecular Weight (calculated) 14266.70 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.48
Length 127 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSRDDLAE SLQNLFTSVS SMVKSELQGT NNHLDLLEKM NLRVASEYDD MGDVAAGLRV FAEQMKSKSG GLDEFVGQMD AIEKQVSEFE AVISVLDRYV
101: SVLESKIRAE YRHPHHQRRS NDSVVTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)