suba logo
AT5G49480.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.864
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ca2+-binding protein 1
Curator
Summary (TAIR10)
AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
Computational
Description (TAIR10)
Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AB023033EMBL:AF325028EMBL:AF378884EMBL:AY052740EMBL:CP002688
EnsemblPlants:AT5G49480EnsemblPlants:AT5G49480.1entrez:835008Gene3D:1.10.238.10GeneID:835008GO:GO:0005509GO:GO:0005829
GO:GO:0042538Gramene:AT5G49480.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF629HOGENOM:HOG000240008InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247KEGG:ath:AT5G49480OMA:LLKIFGCPfam:PF00036Pfam:PF13499Pfscan:PS50222PhylomeDB:Q9FDX6
PROSITE:PS00018PROSITE:PS50222Proteomes:UP000006548RefSeq:NP_199759.1scanprosite:PS00018SMART:SM00054SMR:Q9FDX6
STRING:3702.AT5G49480.1SUPFAM:SSF47473TAIR:AT5G49480tair10-symbols:ATCP1tair10-symbols:CP1UniGene:At.25561UniProt:Q9FDX6
Coordinates (TAIR10) chr5:+:20070812..20071294
Molecular Weight (calculated) 17212.10 Da
IEP (calculated) 4.03
GRAVY (calculated) -0.29
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MCPSGRIAIP ITTTANPNFR PAFEIIDTDH DGKISSDDLR AFYAGIPSGE NNDETMIGTM ISVADANKDG FVEFDEFEKV LETTPFSRSG NGGDDGLMKD
101: VFKVMDKDGD GRLSYGDLKS YMDSAGLAVT DDEIKSMIRL AGGDLNDGVS FDGLLKIFGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)