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AT5G49380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.499
cytosol 0.362
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G06670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ7AeggNOG:KOG2175EMBL:AB023034EMBL:CP002688EnsemblPlants:AT5G49380EnsemblPlants:AT5G49380.1entrez:834998
GeneID:834998Gramene:AT5G49380.1hmmpanther:PTHR23318InterPro:IPR006887KEGG:ath:AT5G49380OMA:MQELFARPfam:PF04802
PhylomeDB:Q9FGX9Proteomes:UP000006548RefSeq:NP_199749.1STRING:3702.AT5G49380.1TAIR:AT5G49380UniGene:At.55455UniProt:Q9FGX9
Coordinates (TAIR10) chr5:+:20025565..20027078
Molecular Weight (calculated) 25318.60 Da
IEP (calculated) 5.07
GRAVY (calculated) 0.01
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLFHSSLQV VADYGNTDQM RLTELMLKNG AFFQKLIDVF DDCENRKDID GLHMMFNIVK EIISVNNYQI LEIILGDQLF MKIFGCLEYD PDVPQSKDHR
101: TSLRKNVVFV EDIPIKNPLV LSKIHQTYRI DFLKDVVLTD VLDVATSAFL DSVINANKAT VLTLLKDDIQ ESFARLRSPS TSDESRNNLV FPLHEASIIF
201: LRLWSFCNSW SNVWKWLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)