AT5G49350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycine-rich protein family | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycine-rich protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56320.1); Has 238380 Blast hits to 50570 proteins in 2556 species: Archae - 501; Bacteria - 82085; Metazoa - 74414; Fungi - 14097; Plants - 19695; Viruses - 3313; Other Eukaryotes - 44275 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20009834..20011095 | ||||||||||||||||||||
| Molecular Weight (calculated) | 28908.60 Da | ||||||||||||||||||||
| IEP (calculated) | 4.35 | ||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||
| Length | 302 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFSFNRELR ISVTIVTFFF LLVSFPGNTY SEEDDSEVGG EGGGIGGGGT GFGGGGTGVG GGGTGFGGGG LGAGGSGGGG AGGLGSGGTG VGGGGGLGAG 101: GSGGGGAGGL GGGGTGVGGG GTGGGTGFNG GGTGFGPFGG GGLGTGGGGA GGLGGGGGNG GFGGGGLGGG GLGGEDPPEI VAKALECLNE KHIYRECDES 201: WRLTLNGDLN IPLGRTEEFC EGPCFSETHL ALNCIEEIIH HYRFFNRATI HDIRETLKSG CSYGPERGVF NVLEHIEDEE ENASEKIKSR FGPLLFIIAL 301: LL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)