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AT5G49320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.895
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJTKeggNOG:ENOG410YGABEMBL:AB016872EMBL:BT010904EMBL:BT012130EMBL:CP002688EnsemblPlants:AT5G49320
EnsemblPlants:AT5G49320.1entrez:834992GeneID:834992GO:GO:0016021Gramene:AT5G49320.1hmmpanther:PTHR31769hmmpanther:PTHR31769:SF2
HOGENOM:HOG000006243InterPro:IPR009606KEGG:ath:AT5G49320OMA:PRPVCHRPfam:PF06749PhylomeDB:Q9FJ08Proteomes:UP000006548
RefSeq:NP_199743.1TAIR:AT5G49320TMHMM:TMhelixUniGene:At.29791UniProt:Q9FJ08
Coordinates (TAIR10) chr5:-:19995083..19996214
Molecular Weight (calculated) 27884.20 Da
IEP (calculated) 9.03
GRAVY (calculated) 0.47
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRTRVRAVT HQDLVPNPKT TDLSSKTGIF IAVLTIIFGL SCFVLCLYAE ATRSQATWGS KTCVYNGSGK TPLLCGAIAF VGLAVAMVGF HMYLLIAVTT
101: SPSLVLVEWD PDSVPAKRLT FQAAFFFVST WVCFGVGEVL LLVALSVESG HLKNWSKPKP SCLVIRQGLF SAAGVFSLIT VFLATGLYLT ALQAHRISKD
201: LENTHREIIE ASVLYASPPR SPTNRMATVA REGLATVRDE STSLEYLVSL KQLAHIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)