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AT5G49270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curator
Summary (TAIR10)
Involved in successfully establishing tip growth in root hairs.
Computational
Description (TAIR10)
SHAVEN 2 (SHV2); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein-7 precursor (TAIR:AT4G16120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU4AeggNOG:ENOG4110783EMBL:AB016872EMBL:BT008328EMBL:CP002688EnsemblPlants:AT5G49270EnsemblPlants:AT5G49270.1
entrez:834987ExpressionAtlas:Q9FJ13GeneID:834987Genevisible:Q9FJ13GO:GO:0005886GO:GO:0009932GO:GO:0010053
GO:GO:0010215GO:GO:0031225GO:GO:0048765Gramene:AT5G49270.1hmmpanther:PTHR31052hmmpanther:PTHR31052:SF3HOGENOM:HOG000217914
InParanoid:Q9FJ13InterPro:IPR006918KEGG:ath:AT5G49270OMA:CERRPIIPaxDb:Q9FJ13Pfam:PF04833Pfam:Q9FJ13
PhylomeDB:Q0WRJ1PhylomeDB:Q9FJ13PRIDE:Q9FJ13PRO:PR:Q9FJ13ProDom:PD140986Proteomes:UP000006548RefSeq:NP_199738.1
STRING:3702.AT5G49270.1TAIR:AT5G49270tair10-symbols:COBL9tair10-symbols:DER9tair10-symbols:MRH4tair10-symbols:SHV2TMHMM:TMhelix
UniGene:At.29795UniProt:Q0WRJ1UniProt:Q9FJ13
Coordinates (TAIR10) chr5:-:19972021..19974398
Molecular Weight (calculated) 73139.70 Da
IEP (calculated) 5.40
GRAVY (calculated) 0.03
Length 663 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVLLPIFFG VLLLFTVTPP SMSQLPPTIM VPAPAPAPIS PSDLCNGIFL SYDFILGRKI PPNDTADQPY RFESVLTVLN NGREELKEWR VFVGFQHNEI
101: LISATDALIV NGTELPALVG NGTIFGGYPV SDLKTAIQTA GDLKQMTAEI ELVGTQFMVA PPAVPLPSNI SLVNEGWLCP VPTLQSKREL TTCCIRDASI
201: IVNTTITTKF LPRQPGDLTI MYDVIRAYDQ NYLTEVTMEN HNPLGRLDHW ELSFDWMRDE FIQKMQGAYP TVVDATKCIF GPQSLIYTGL DFADVLTCER
301: RPIIIDLPPT KKDDSTLGNI PSCCRNGTIL PRIMDPSKSV SVFTMQVAKM PPDFNRSALF PPQNWRIKGT LNPDYSCGPP VRVTPTFYPD PSGMPTNKSS
401: FASWQIVCNI TQAKTEIPKC CVSFSAFFND SIIPCNTCAC GCVSETRRTC SAETPSLLIP PDALLLPFEN RTALTLAWNA LKHKTLPNPM PCGDNCGVSI
501: NWHMASDYRG GWTVRITIFN WGEIDFPNWF LAVQMKKPAL LGFEKAYSFN ASLLSVDGGV NNTIFMEGLP GLDYLVAEAD EKDPKKKNIR IPGKQQSVIQ
601: FSKKLTPGIN VAERDGFPAK VIFNGEECLL PDLLPMASGG RRNGAITVLS FITFYVAAFM VLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)