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AT5G49030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA synthetase class I (I, L, M and V) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovule abortion 2 (OVA2); FUNCTIONS IN: in 6 functions; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain (InterPro:IPR010663), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT4G10320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G49030-MONOMERBioCyc:ARA:GQT-2807-MONOMEREC:6.1.1.5eggNOG:COG0060eggNOG:KOG0433EMBL:AB017061EMBL:AK316685
EMBL:AY080830EMBL:AY142605EMBL:CP002688EnsemblPlants:AT5G49030EnsemblPlants:AT5G49030.1EnsemblPlants:AT5G49030.2entrez:834962
ExpressionAtlas:Q8RXK8Gene3D:1.10.730.10Gene3D:3.40.50.620Gene3D:3.90.740.10GeneID:834962Genevisible:Q8RXK8GO:GO:0002161
GO:GO:0004822GO:GO:0005524GO:GO:0005739GO:GO:0006428GO:GO:0009507GO:GO:0009570GO:GO:0046872
GO:GO:0048481gramene_pathway:6.1.1.5gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_02002hmmpanther:PTHR11946hmmpanther:PTHR11946:SF82HOGENOM:HOG000246402
InterPro:IPR001412InterPro:IPR002300InterPro:IPR002301InterPro:IPR009008InterPro:IPR009080InterPro:IPR013155InterPro:IPR014729
InterPro:IPR023585KEGG:00970+6.1.1.5KEGG:ath:AT5G49030KO:K01870ncoils:CoilPaxDb:Q8RXK8Pfam:PF00133
Pfam:PF08264PhylomeDB:Q8RXK8PRIDE:Q8RXK8PRINTS:PR00984PRO:PR:Q8RXK8ProMEX:Q8RXK8PROSITE:PS00178
ProteinModelPortal:Q8RXK8Proteomes:UP000006548RefSeq:NP_001032042.1RefSeq:NP_199714.2scanprosite:PS00178SMR:Q8RXK8STRING:3702.AT5G49030.3
SUPFAM:SSF47323SUPFAM:SSF50677SUPFAM:SSF52374TAIR:AT5G49030tair10-symbols:OVA2TIGRfam:TIGR00392TIGRFAMs:TIGR00392
UniGene:At.8644UniProt:Q8RXK8
Coordinates (TAIR10) chr5:-:19875091..19882291
Molecular Weight (calculated) 123014.00 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.35
Length 1093 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSFFKSFAG NPREAAAMAM VQSSSYRVLS GKSCSNLRRN TPLDSFLAKG RSSVKAFSFL YVSRFSTEPN NEFGHSSKRR SRGPVMAAKK ASEGEKQEDG
0101: KYKQTVDLPK TGFGMRANSL TREPELQKLW EENQVFKRVS DNNNGGSFIL HDGPPYANGD LHMGHALNKI LKDIINRYKL LQNYKVQYVP GWDCHGLPIE
0201: LKVLQSLDQE VRKELTPLKL RAKAAKFAKA TVKTQMESFK RFGVWADWNN PYLTLDPEYE AAQIEVFGQM ALKGYIYRGR KPVHWSPSSR TALAEAELEY
0301: PEGHISKSIY AIFKLVGGAK TSLLDEFIPN IYLAVWTTTP WTMPANAAVA VNAKLQYSVV EVQSFSEDES TVTSNKKKIP GKVLKNQQKL FVIVATDLVP
0401: ALEAKWGVKL SISKTFLGSD LENCRYTHPI DNRDCPVVIG GDYITTESGT GLVHTAPGHG QEDYATGLKY GLPLVSPVDD EGKFTEEAGQ FRGLSVLGEG
0501: NTAVVSYLDE NMSLVMEESY AHKYPYDWRT KKPTIFRATE QWFASVEGFR TATMDAINNV KWVPHQAVNR ISAMTSSRSD WCISRQRTWG VPIPAFYHVK
0601: TKEPLMNEET INHVKSIISQ KGSDAWWYMS VEDLLPEKYR DKAADYEKGT DTMDVWFDSG SSWAGVLGKR EGLSFPADVY LEGTDQHRGW FQSSLLTSIA
0701: TQGKAPYSAV ITHGFVLDEK GMKMSKSLGN VVDPRLVIEG GKNSKDAPAY GADVMRLWVS SVDYTGDVLI GPQILRQMSD IYRKLRGTLR YLLGNLHDWR
0801: VDNAVPYQDL PIIDQHALFQ LENVVKNIQE CYENYQFFKI FQIIQRFTIV DLSNFYFDIA KDRLYTGGTS SFTRRSCQTV LSTHLLSILR VIAPIVPHLA
0901: EDVWQNLPFE YRNEDGSAAE FVFELKWPTL NEQWLSFPAE DVLFWQRLLE LRTEVNKVLE LARNEKMIGS SLEAKVYLHT ADAGMAAKLL EMSEAKNEAD
1001: TLQRIFITSQ VEVLSSMEKE MISSVQHTGE YVEGENKVWI GVSRAEGSKC ERCWNYSGQV GSFSDHPTLC GRCFSVIVAN PPEPAVAAVN SLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)