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AT5G49000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39580.1); Has 1885 Blast hits to 1720 proteins in 114 species: Archae - 4; Bacteria - 93; Metazoa - 768; Fungi - 4; Plants - 962; Viruses - 11; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G49000EnsemblPlants:AT5G49000.1entrez:834959hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23Pfam:PF00646Pfam:PF01344
SUPFAM:0052715
Coordinates (TAIR10) chr5:+:19864527..19865645
Molecular Weight (calculated) 37533.00 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.41
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPERKRKK RSLEPSPEST PNPSLPDDLI VSILARVSRL YYPILSLVSK SSRTLVTSPE LYKTRSFFNR TESCLYVCLD FPPDPNPRWF TLYRKPNQNI
101: TEKTKNSSGS HTWHEAPSMR MKRNYPAANV VDGKIYVAGG LEEFDSSKWM EVFDIKTQTW EFVLSPLAER FIYRSLVIEG EIYIFGDKVV TYKPKEDRWG
201: GVGEHQSMDL GLFFHSYCVI DNVLYCYRPG GIKWYESEKR SWRKLRGLKG LSKLASSCVK LADYGGKMAL LWDKYIPCSG NKSHSISCAV VSLERCKNQG
301: IRGKVEWFDD MLTVPSSYNF VGALAATL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)