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AT5G48960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT1G75210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAVeggNOG:KOG2469EMBL:CP002688EnsemblPlants:AT5G48960EnsemblPlants:AT5G48960.1entrez:834954Gene3D:3.40.50.1000
GeneID:834954GO:GO:0009507GO:GO:0009570GO:GO:0016787Gramene:AT5G48960.1hmmpanther:PTHR12103hmmpanther:PTHR12103:SF15
InterPro:IPR008380InterPro:IPR023214iPTMnet:F4K3A9KEGG:ath:AT5G48960OMA:SEWAYTEPANTHER:PTHR12103PaxDb:F4K3A9
Pfam:PF05761PRIDE:F4K3A9ProteinModelPortal:F4K3A9Proteomes:UP000006548RefSeq:NP_199707.2SMR:F4K3A9STRING:3702.AT5G48960.1
SUPFAM:SSF56784TAIR:AT5G48960TIGRfam:TIGR02244TIGRFAMs:TIGR02244UniGene:At.27311UniProt:F4K3A9
Coordinates (TAIR10) chr5:+:19849645..19853382
Molecular Weight (calculated) 72896.60 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.35
Length 642 amino acids
Sequence (TAIR10)
(BLAST)
001: MPNFSVNVPQ LSSLYSTKTP KVRMNLCADQ VFDKKLLWRD MSTKMKFPSF SAAELPDLRK SNKRRGSLRM IKCRAAGADG GRVAVGDDVF SVTTSSKYEV
101: DYLGQSTKGD LNLKLDPLQS FGDGQATLEG PIEEVARTEA QAAENLIREL GIQGPFSAQH SPRGIFCSRT LNLRSISAIG YDMDYTLMHY NVMAWEGKAY
201: DYCMENLKSM GFPVDGLAFD PELVIRGLMI DKEKGNLVKA DRFGYVKRAM HGTKMLSNKA VSEIYGRELV DLRNQSRWEF LNTFFSVSEA LAYAQMVDRL
301: DDGFISADLG TLDYKGLYKA VAKALFRAHV EGQLKSEIMS KPELFVEPDP ELPLALLDQK EAGKKLLLIT NSDYHYTDKM MKHSFNKFLP NDMDWRDLFD
401: MVIVSARKPE FFQMSHPLYE VVTGEGLMRP CFKAETGGLY SGGSAQMIES SLNVHGDEIL YVGDHIYTDV SVSKVHLRWR TALICRELEE EYMALIGSRG
501: HREELIELIN QKEVVGDLFN QLRLALQRRS KGRPAQTLAA TNLDDQELTE TMQKLLIVMQ RLDDKIGLML ETDGELFNKR WGFLSRAGLW DKSHLMRQIE
601: KYADIYTSRV SNFLNYTPFM YFRSQEQSLA HDSPLPDAGI EN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)