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AT5G48940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G48940-MONOMEREC:2.7.11.1eggNOG:COG4886eggNOG:ENOG410IVCCEMBL:AB017061EMBL:AJ550162EMBL:CP002688
EMBL:FJ708795EnsemblPlants:AT5G48940EnsemblPlants:AT5G48940.1entrez:834952Gene3D:3.80.10.10GeneID:834952Genevisible:C0LGV1
GO:GO:0004674GO:GO:0005524GO:GO:0016021Gramene:AT5G48940.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF92HOGENOM:HOG000116551
InParanoid:C0LGV1InterPro:IPR000719InterPro:IPR001245InterPro:IPR001611InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013210InterPro:IPR017441InterPro:IPR032675KEGG:ath:AT5G48940OMA:SEICQERPaxDb:C0LGV1Pfam:C0LGV1
Pfam:PF07714Pfam:PF08263Pfam:PF13855Pfscan:PS50011Pfscan:PS51450PhylomeDB:C0LGV1PRIDE:C0LGV1
PRO:PR:C0LGV1PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011PROSITE:PS51450ProteinModelPortal:C0LGV1Proteomes:UP000006548
RefSeq:NP_199705.2scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMART:SM00369SMR:C0LGV1STRING:3702.AT5G48940.1
SUPFAM:SSF52047SUPFAM:SSF56112TAIR:AT5G48940TMHMM:TMhelixUniGene:At.29816UniProt:C0LGV1
Coordinates (TAIR10) chr5:+:19839785..19843744
Molecular Weight (calculated) 123619.00 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.01
Length 1135 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSLQMPIPRK KALTVSHFSI TLSLFLAFFI SSTSASTNEV SALISWLHSS NSPPPSVFSG WNPSDSDPCQ WPYITCSSSD NKLVTEINVV SVQLALPFPP
0101: NISSFTSLQK LVISNTNLTG AISSEIGDCS ELIVIDLSSN SLVGEIPSSL GKLKNLQELC LNSNGLTGKI PPELGDCVSL KNLEIFDNYL SENLPLELGK
0201: ISTLESIRAG GNSELSGKIP EEIGNCRNLK VLGLAATKIS GSLPVSLGQL SKLQSLSVYS TMLSGEIPKE LGNCSELINL FLYDNDLSGT LPKELGKLQN
0301: LEKMLLWQNN LHGPIPEEIG FMKSLNAIDL SMNYFSGTIP KSFGNLSNLQ ELMLSSNNIT GSIPSILSNC TKLVQFQIDA NQISGLIPPE IGLLKELNIF
0401: LGWQNKLEGN IPDELAGCQN LQALDLSQNY LTGSLPAGLF QLRNLTKLLL ISNAISGVIP LEIGNCTSLV RLRLVNNRIT GEIPKGIGFL QNLSFLDLSE
0501: NNLSGPVPLE ISNCRQLQML NLSNNTLQGY LPLSLSSLTK LQVLDVSSND LTGKIPDSLG HLISLNRLIL SKNSFNGEIP SSLGHCTNLQ LLDLSSNNIS
0601: GTIPEELFDI QDLDIALNLS WNSLDGFIPE RISALNRLSV LDISHNMLSG DLSALSGLEN LVSLNISHNR FSGYLPDSKV FRQLIGAEME GNNGLCSKGF
0701: RSCFVSNSSQ LTTQRGVHSH RLRIAIGLLI SVTAVLAVLG VLAVIRAKQM IRDDNDSETG ENLWTWQFTP FQKLNFTVEH VLKCLVEGNV IGKGCSGIVY
0801: KAEMPNREVI AVKKLWPVTV PNLNEKTKSS GVRDSFSAEV KTLGSIRHKN IVRFLGCCWN KNTRLLMYDY MSNGSLGSLL HERSGVCSLG WEVRYKIILG
0901: AAQGLAYLHH DCVPPIVHRD IKANNILIGP DFEPYIGDFG LAKLVDDGDF ARSSNTIAGS YGYIAPEYGY SMKITEKSDV YSYGVVVLEV LTGKQPIDPT
1001: IPDGLHIVDW VKKIRDIQVI DQGLQARPES EVEEMMQTLG VALLCINPIP EDRPTMKDVA AMLSEICQER EESMKVDGCS GSCNNGRERG KDDSTSSVMQ
1101: QTAKYLRSSS TSFSASSLLY SSSSSATSNV RPNLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)