suba logo
AT5G48900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
no data
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G48900-MONOMERBioGrid:20194CAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410JV30EMBL:AB017061
EMBL:AY050404EMBL:AY050795EMBL:AY086099EMBL:CP002688EnsemblPlants:AT5G48900EnsemblPlants:AT5G48900.1entrez:834948
Gene3D:2.160.20.10GeneID:834948Genevisible:Q93WF1GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT5G48900.1
hmmpanther:PTHR31683hmmpanther:PTHR31683:SF19HOGENOM:HOG000237948InParanoid:Q93WF1InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT5G48900KO:K01728OMA:QWRHWNWPaxDb:Q93WF1Pfam:PF00544
Pfam:Q93WF1PhylomeDB:Q93WF1PRIDE:Q93WF1PRINTS:PR00807PRO:PR:Q93WF1ProteinModelPortal:Q93WF1Proteomes:UP000006548
RefSeq:NP_568705.1SMART:SM00656SMR:Q93WF1STRING:3702.AT5G48900.1SUPFAM:SSF51126TAIR:AT5G48900UniGene:At.26564
UniPathway:UPA00545UniProt:Q93WF1
Coordinates (TAIR10) chr5:+:19825240..19828909
Molecular Weight (calculated) 46730.30 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.32
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTQILVVF ASALLLSMFF TGVDSTRSNE TWHEHAVENP EEVAAMVDMS IRNSTARRRL GYFSCSTGNP IDDCWRCDRR WQSRRKHLAN CAIGFGRNAI
101: GGRDGRYYVV SDPNDDNPVN PKPGTLRHAV IQEEPLWIVF KRDMVITLKE ELIMNSFKTI DGRGVNVHIA NGACITIQFV TNIIIHGIHI HDCRPTGNAM
201: VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSNCADG LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGE GLIQRMPRCR
301: HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGQWQWRHWN WRSEGDLFLN GAFFTRSGSG LGASYARASS LAAKSSSLVG
401: VITYNAGALN CRGGRRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)