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AT5G48870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.609
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.
Computational
Description (TAIR10)
SUPERSENSITIVE TO ABA AND DROUGHT 1 (SAD1); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG1775EMBL:AB012242EMBL:AK229657
EMBL:AY034896EMBL:BT025700EMBL:CP002688EMBL:JQ612715
EnsemblPlants:AT5G48870EnsemblPlants:AT5G48870.1entrez:834945GeneID:834945
Genevisible:Q9FKB0GO:GO:0000398GO:GO:0000956GO:GO:0003723
GO:GO:0005681GO:GO:0005688GO:GO:0005737GO:GO:0009414
GO:GO:0009737GO:GO:0046540GO:GO:1990726Gramene:AT5G48870.1
hmmpanther:PTHR20971HOGENOM:HOG000223547InParanoid:Q9FKB0InterPro:IPR001163
InterPro:IPR010920KEGG:ath:AT5G48870KO:K12624OMA:SRIWIAM
PaxDb:Q9FKB0Pfam:PF01423Pfam:Q9FKB0PhylomeDB:Q9FKB0
PRIDE:Q9FKB0PRO:PR:Q9FKB0ProteinModelPortal:Q9FKB0Proteomes:UP000006548
Reactome:R-ATH-430039Reactome:R-ATH-72163RefSeq:NP_199698.1SMART:SM00651
SMR:Q9FKB0STRING:3702.AT5G48870.1SUPFAM:SSF50182TAIR:AT5G48870
tair10-symbols:SAD1UniGene:At.49146UniGene:At.6838UniProt:Q9FKB0
Coordinates (TAIR10) chr5:+:19813407..19814362
Molecular Weight (calculated) 9658.74 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.00
Length 88 amino acids
Sequence (TAIR10)
(BLAST)
1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)