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AT5G48850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.
Computational
Description (TAIR10)
SULPHUR DEFICIENCY-INDUCED 1 (ATSDI1); FUNCTIONS IN: binding; INVOLVED IN: cellular response to sulfur starvation, regulation of sulfur utilization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1); Has 255 Blast hits to 246 proteins in 34 species: Archae - 2; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIJ9eggNOG:ENOG410YFASEMBL:AB012242EMBL:AK118038EMBL:BT005297EMBL:CP002688EnsemblPlants:AT5G48850
EnsemblPlants:AT5G48850.1entrez:834943Gene3D:1.25.40.10GeneID:834943Genevisible:Q8GXU5GO:GO:0005634GO:GO:0006792
GO:GO:0010438Gramene:AT5G48850.1hmmpanther:PTHR36326hmmpanther:PTHR36326:SF1HOGENOM:HOG000239762InParanoid:Q8GXU5InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT5G48850ncoils:CoilOMA:QQNNFEAPaxDb:Q8GXU5Pfam:PF07719
Pfam:PF13181Pfam:Q8GXU5Pfscan:PS50005Pfscan:PS50293PRIDE:Q8GXU5PRO:PR:Q8GXU5PROSITE:PS50005
PROSITE:PS50293ProteinModelPortal:Q8GXU5Proteomes:UP000006548RefSeq:NP_199696.2SMR:Q8GXU5STRING:3702.AT5G48850.1SUPFAM:SSF48452
TAIR:AT5G48850tair10-symbols:ATSDI1UniGene:At.29820UniProt:Q8GXU5
Coordinates (TAIR10) chr5:-:19805576..19807699
Molecular Weight (calculated) 35258.50 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.55
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MERSLKKTKN NYNNSIKSNL MKDDELFHVI HKVPCGDTPY VRAKHAQLIE KNPEMAIVWF WKAINTGDRV DSALKDMAVV MKQLDRSEEA IEAIKSFRPR
101: CSKNSQDSLD NVLIDLYKKC GRMEEQVELL KRKLRQIYQG EAFNGKPTKT ARSHGKKFQV TVQQEISRLL GNLGWAYMQQ AKYLSAEAVY RKAQMVEPDA
201: NKSCNLAMCL IKQGRFEEGR LVLDDVLEYR VLGADDCRTR QRAEELLSEL ESSLPRMRDA EMEDVLGNIL DDDFVLGLEE MTSTSFKSKR LPIFEQISSF
301: RNTLVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)