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AT5G48820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20018602 (2010): nucleus
  • PMID:17253089 (2007): nucleus nuclear matrix chromatin
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : inhibitor/interactor with cyclin-dependent kinase
Curator
Summary (TAIR10)
Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.
Computational
Description (TAIR10)
inhibitor/interactor with cyclin-dependent kinase (ICK6); CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: Cyclin-dependent kinase inhibitor family protein (TAIR:AT3G24810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20186EMBL:AB012242EMBL:AJ301554EMBL:BT025290EMBL:CP002688EnsemblPlants:AT5G48820EnsemblPlants:AT5G48820.1
entrez:834940ExpressionAtlas:Q9FKB5GeneID:834940Genevisible:Q9FKB5GO:GO:0004861GO:GO:0005654GO:GO:0007050
hmmpanther:PTHR10265hmmpanther:PTHR10265:SF23HOGENOM:HOG000239712InParanoid:Q9FKB5IntAct:Q9FKB5InterPro:IPR003175InterPro:IPR016701
iPTMnet:Q9FKB5PANTHER:PTHR10265Pfam:PF02234Pfam:Q9FKB5PhylomeDB:Q9FKB5PIRSF:PIRSF017811PRIDE:Q9FKB5
PRO:PR:Q9FKB5ProteinModelPortal:Q9FKB5Proteomes:UP000006548RefSeq:NP_199693.1SMR:Q9FKB5TAIR:AT5G48820tair10-symbols:ICK6
tair10-symbols:KRP3UniGene:At.6832UniProt:Q9FKB5
Coordinates (TAIR10) chr5:-:19792608..19794346
Molecular Weight (calculated) 24926.30 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.68
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)