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AT5G48670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 80
Curator
Summary (TAIR10)
AGL80 is a member of the MADS box family of genes. AGL80 functions as a transcription factor within the central cell gene regulatory network and controls the expression of downstream genes required for central cell development and function.
Computational
Description (TAIR10)
AGAMOUS-like 80 (AGL80); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G27810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20171eggNOG:COG5068eggNOG:KOG0014EMBL:AB015468EMBL:CP002688EMBL:DQ056710EMBL:DQ406752
EnsemblPlants:AT5G48670EnsemblPlants:AT5G48670.1entrez:834925GeneID:834925Genevisible:Q9FJK3GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0043078Gramene:AT5G48670.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF183HOGENOM:HOG000033845
InParanoid:Q9FJK3IntAct:Q9FJK3InterPro:IPR002100KEGG:ath:AT5G48670ncoils:CoilOMA:NDLGYMIPaxDb:Q9FJK3
Pfam:PF00319Pfam:Q9FJK3Pfscan:PS50066PhylomeDB:Q9FJK3PRIDE:Q9FJK3PRINTS:PR00404PRO:PR:Q9FJK3
PROSITE:PS50066ProteinModelPortal:Q9FJK3Proteomes:UP000006548RefSeq:NP_199678.1SMART:SM00432SMR:Q9FJK3STRING:3702.AT5G48670.1
SUPFAM:SSF55455TAIR:AT5G48670tair10-symbols:AGL80tair10-symbols:FEM111UniGene:At.62436UniProt:Q9FJK3
Coordinates (TAIR10) chr5:-:19738825..19739790
Molecular Weight (calculated) 36826.60 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.65
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)