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AT5G48650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 3431 Blast hits to 3335 proteins in 383 species: Archae - 4; Bacteria - 254; Metazoa - 1514; Fungi - 549; Plants - 825; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YV57eggNOG:KOG0116EMBL:BT002864EMBL:BT005640EMBL:CP002688EnsemblPlants:AT5G48650EnsemblPlants:AT5G48650.1
entrez:834922Gene3D:3.10.450.50Gene3D:3.30.70.330GeneID:834922GO:GO:0000166GO:GO:0003676GO:GO:0005829
GO:GO:0006810Gramene:AT5G48650.1hmmpanther:PTHR10693hmmpanther:PTHR10693:SF23IntAct:Q84JH2InterPro:IPR000504InterPro:IPR002075
InterPro:IPR012677InterPro:IPR018222InterPro:IPR032710KEGG:ath:AT5G48650OMA:PFNANIDPfam:PF00076Pfam:PF02136
Pfscan:PS50102Pfscan:PS50177PhylomeDB:Q84JH2PROSITE:PS50102PROSITE:PS50177Proteomes:UP000006548RefSeq:NP_199676.2
SMART:SM00360SMR:Q84JH2STRING:3702.AT5G48650.1SUPFAM:SSF54427SUPFAM:SSF54928TAIR:AT5G48650UniGene:At.29836
UniProt:Q84JH2
Coordinates (TAIR10) chr5:+:19727279..19729533
Molecular Weight (calculated) 50077.20 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.56
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSTAATKRV VDPLTVGSAF VNQYYYIFCN MPEHLPRFYQ EISRVGRVGQ DGVMRDFSTF QGISEELKRL TYGDCNSAEI TSYDTQESHN GGFLLFVTGY
101: FTLNERSRRK FTQTFFLAPQ EKGFFVLNDI LRFVNDDAKD NVPETIDGEV VSGINSTTPT IINGMKGSEQ AACVSVNPVC KEVSKPLDNE NAKDNVLVPE
201: IANEVARTEI TCKEVADDSQ KNYDPDDGLA DAPKKSYASV LKVTKDKFGV PAVSLPSPKK IPKDQEHQAP SDPSTGQILK DQGQQASSDP SQVIESDTVS
301: ESVDASENGH NQEAVAEGTS IYVRHLPFNA NIDMLEAEFK QFGAITNGGI QVINQRGLGY PYGFVEFEEA DAAHRAIEAS PVKIGGLRAF VEEKLSTSRG
401: KRGNGNVGYG NRNVGVGMRG RGSYGYGYDY RRGGRGPGGG GRSFNRRGNE YVASINSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)