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AT5G48580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FK506- and rapamycin-binding protein 15 kD-2
Curator
Summary (TAIR10)
immunophilin (FKBP15-2)
Computational
Description (TAIR10)
FK506- and rapamycin-binding protein 15 kD-2 (FKBP15-2); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 15 kD-1 (TAIR:AT3G25220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G48580-MONOMEREC:5.2.1.8eggNOG:COG0545eggNOG:KOG0549EMBL:AB015468EMBL:AF370159EMBL:AY059146
EMBL:AY085294EMBL:CP002688EMBL:U52047EnsemblPlants:AT5G48580EnsemblPlants:AT5G48580.1entrez:834915GeneID:834915
Genevisible:Q38936GO:GO:0000413GO:GO:0003755GO:GO:0005528GO:GO:0005773GO:GO:0005783GO:GO:0005788
GO:GO:0005789GO:GO:0005794GO:GO:0005829GO:GO:0061077Gramene:AT5G48580.1hmmpanther:PTHR10516hmmpanther:PTHR10516:SF293
HOGENOM:HOG000154887InParanoid:Q38936InterPro:IPR001179InterPro:IPR023566KEGG:ath:AT5G48580KO:K09569OMA:CEVQAHK
PANTHER:PTHR10516PaxDb:Q38936Pfam:PF00254Pfam:Q38936Pfscan:PS50059PhylomeDB:Q38936PIR:S71238
PRIDE:Q38936PRO:PR:Q38936PROSITE:PS50059ProteinModelPortal:Q38936Proteomes:UP000006548RefSeq:NP_199669.1SMR:Q38936
STRING:3702.AT5G48580.1SUPFAM:SSF54534TAIR:AT5G48580tair10-symbols:FKBP15-2TMHMM:TMhelixUniGene:At.21136UniGene:At.29840
UniProt:Q38936
Coordinates (TAIR10) chr5:-:19696156..19697304
Molecular Weight (calculated) 17659.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.36
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKMSLRYS LFLIFFSLIS LQGFAKKTGD VSELQIGVKF KPKTCEVQAH KGDTIKVHYR GKLTDGTVFD SSFERGDPFE FKLGSGQVIK GWDQGLLGAC
101: VGEKRKLKIP AKLGYGEQGS PPTIPGGATL IFDTELIAVN EKPAGGEEYG GDEDDEGYGN DEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)