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AT5G48540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:24393051 (2015): extracellular region
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor-like protein kinase-related family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor-like protein kinase-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Receptor-like protein kinase-related family protein (TAIR:AT3G22060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKKSeggNOG:ENOG410YD44EMBL:AB020745EMBL:AY050924EMBL:AY091425EMBL:CP002688EnsemblPlants:AT5G48540
EnsemblPlants:AT5G48540.1entrez:834910GeneID:834910Genevisible:Q9LV60GO:GO:0005576GO:GO:0080167Gramene:AT5G48540.1
hmmpanther:PTHR32411hmmpanther:PTHR32411:SF43HOGENOM:HOG000116552InParanoid:Q9LV60InterPro:IPR002902KEGG:ath:AT5G48540OMA:QCFATAV
PaxDb:Q9LV60Pfam:PF01657Pfam:Q9LV60Pfscan:PS51257Pfscan:PS51473PhylomeDB:Q9LV60PRIDE:Q9LV60
PRO:PR:Q9LV60PROSITE:PS51473ProteinModelPortal:Q9LV60Proteomes:UP000006548RefSeq:NP_199665.1SMR:Q9LV60STRING:3702.AT5G48540.1
TAIR:AT5G48540UniGene:At.7058UniGene:At.74064UniProt:Q9LV60
Coordinates (TAIR10) chr5:-:19669096..19669887
Molecular Weight (calculated) 28996.80 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.13
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTLVVKCFL LLALVCSCRA ADSIWQLCNT NSNISASSQV SKNIDSLLAT LVSKTPSKGF KTTTSSSYNN KEKVYGLAQC RGDISNTDCS TCIQDAAKKI
101: REVCQNQSDS RILYDFCFLR YSQENFIGKL DTGAGLIYFN VANVTEIDPK KFDNELGALF DKIRSEAVLP KNKGLGKGKT KLTPFVTLNG LVQCTRDLSE
201: LDCAQCFATA VGSFMTTCHN KKGCRVLYSS CYVRYEFYPF YFPLDPAKTG PSVGRISSVH LSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)