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AT5G48485.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.
Computational
Description (TAIR10)
DEFECTIVE IN INDUCED RESISTANCE 1 (DIR1); FUNCTIONS IN: lipid binding, lipid transporter activity; INVOLVED IN: systemic acquired resistance, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G48490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20150eggNOG:ENOG410J2D8eggNOG:ENOG410YXDYEMBL:AB020745
EMBL:AF342726EMBL:AY062857EMBL:AY085224EMBL:BT006510
EMBL:CP002688EnsemblPlants:AT5G48485EnsemblPlants:AT5G48485.1entrez:834904
EvolutionaryTrace:Q8W453GeneID:834904Genevisible:Q8W453GO:GO:0005504
GO:GO:0005783GO:GO:0006869GO:GO:0008270GO:GO:0009506
GO:GO:0009862GO:GO:0043621GO:GO:0048046Gramene:AT5G48485.1
hmmpanther:PTHR33122hmmpanther:PTHR33122:SF5HOGENOM:HOG000242259InParanoid:Q8W453
InterPro:IPR016140KEGG:ath:AT5G48485OMA:APSEACCPaxDb:Q8W453
PDB:2RKNPDBsum:2RKNPfam:PF14368Pfam:Q8W453
PhylomeDB:Q8W453PRIDE:Q8W453PRO:PR:Q8W453ProteinModelPortal:Q8W453
Proteomes:UP000006548RefSeq:NP_568699.1SMART:SM00499SMR:Q8W453
STRING:3702.AT5G48485.1SUPFAM:SSF47699TAIR:AT5G48485tair10-symbols:DIR1
TMHMM:TMhelixUniGene:At.27209UniProt:Q8W453
Coordinates (TAIR10) chr5:-:19646317..19646625
Molecular Weight (calculated) 10702.10 Da
IEP (calculated) 4.56
GRAVY (calculated) 0.25
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKKAAMVM MAMIVIMAML VDTSVAIDLC GMSQDELNEC KPAVSKENPT SPSQPCCTAL QHADFACLCG YKNSPWLGSF GVDPELASAL PKQCGLANAP
101: TC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)