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AT5G48410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.966
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26748395 (2016): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate receptor 1.3
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 1.3 (GLR1.3); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: Glutamate receptor family protein (TAIR:AT5G48400.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20142eggNOG:ENOG410ISR3eggNOG:ENOG410XPSHEMBL:AB020745EMBL:AY091121EMBL:AY142599EMBL:CP002688
EnsemblPlants:AT5G48410EnsemblPlants:AT5G48410.1entrez:834896GeneID:834896Genevisible:Q9FH75GO:GO:0004970GO:GO:0005262
GO:GO:0005622GO:GO:0005886GO:GO:0006816GO:GO:0008066GO:GO:0016021GO:GO:0019722GO:GO:0070588
GO:GO:0071230Gramene:AT5G48410.1hmmpanther:PTHR18966hmmpanther:PTHR18966:SF117HOGENOM:HOG000239558InParanoid:Q9FH75InterPro:IPR001320
InterPro:IPR001638InterPro:IPR001828InterPro:IPR017103InterPro:IPR028082KEGG:ath:AT5G48410KO:K05387OMA:NEMEKRW
PaxDb:Q9FH75Pfam:PF00060Pfam:PF00497Pfam:PF01094Pfam:Q9FH75PhylomeDB:Q9FH75PIRSF:PIRSF037090
PRIDE:Q9FH75PRO:PR:Q9FH75ProteinModelPortal:Q9FH75Proteomes:UP000006548RefSeq:NP_199652.1SMART:SM00079SMR:Q9FH75
STRING:3702.AT5G48410.1SUPFAM:SSF53822SUPFAM:SSF53850TAIR:AT5G48410tair10-symbols:ATGLR1.3tair10-symbols:GLR1.3TMHMM:TMhelix
UniGene:At.66754UniGene:At.70447UniProt:Q9FH75
Coordinates (TAIR10) chr5:+:19620316..19623277
Molecular Weight (calculated) 97030.00 Da
IEP (calculated) 7.40
GRAVY (calculated) 0.02
Length 860 amino acids
Sequence (TAIR10)
(BLAST)
001: MERFCIQTQT LLSFLLVLLL FISRSFASTK NDDVDGGKRV QIRVGLVLDL GSLKGKIVKN SVSMALSYFY AIHNDYKTRV SVSLRNSHGE PLLALASAVD
101: LLKTEGVEAI IGGNSLLEAK LLGELGEKAR VPMISLDSPF SLSLSKYTHL IQATHDSTSE AKGITSFINV FDWNSVALVY EDHDDWRESM QLLVEHFHEN
201: GVRVQSKVGF TVSSSEDFVM GRLQQLKDLG TTVFVVHLSE VIATHLFPCA RRLGLMGDGF VWILTAKTMN SFHENIDDFT KQAMEGVVGF KSYIPMSIEL
301: QNFTLRWRKS LPVEEAELTR LSISGIWAHD IAFALARAAE VIRMPNVTST LLEEITKTRF NGLSGDFQLN DKKLLSNKFE IINMIGSSER RVGFLNSNGS
401: FSNRRHLSST HNKLETIIWP GGSAQSPKGT SLIDSDRKKL RVLVTSSNRF PRLMKVETDP VTNELIVEGF CIEVFRASIS PFNYEVEYIP WLNGSNYDNL
501: AYALHSQKDK YDAAVGDITI TSNRSTYVDF TLPFTEMGLG IVAVKERSMW VFFQPLTPDL WITSAFFFVL TGVIVWLIER AENKEFQGSW PQQIGVVLWF
601: GFSTLVYAHR EKLKHNLSRF VVTVWVFAVL ILTASYTATL TSMMTVQQIR FNSNEDYVGH LSGSLIANVA LTSSSLRAMR SLGLNSAADY AQALLNKTVS
701: FVVDELPYLK VVLGENPTHF FMVKTQSTTN GFGFMFQKGF ELVPNVSREI SKLRTSEKLN EMEKRWFDNQ LPYTTDDTSN PITLYRFRGL FIIIGVSFAF
801: ALAVLVILCL RDKWEILVDN LDLSQRLRHF RIHFVRSIHT SPLDDPIGET AVQMAQQNRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)