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AT5G48400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.832
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glutamate receptor family protein
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
ATGLR1.2; FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 1.3 (TAIR:AT5G48410.1); Has 3010 Blast hits to 2965 proteins in 183 species: Archae - 3; Bacteria - 141; Metazoa - 2192; Fungi - 0; Plants - 596; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G48400EnsemblPlants:AT5G48400.1entrez:834895hmmpanther:PTHR18966hmmpanther:PTHR18966:SF204Pfam:PF00060Pfam:PF00497
Pfam:PF01094SUPFAM:SSF53850tair10-symbols:ATGLR1.2tair10-symbols:GLR1.2TMHMM:TMhelix
Coordinates (TAIR10) chr5:+:19616244..19618805
Molecular Weight (calculated) 84293.60 Da
IEP (calculated) 6.62
GRAVY (calculated) 0.05
Length 750 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRICIQTPI LLSFLLVLLF FISNCFASSQ NNDDDKRIRV RVGLVLDLGS VEGKIVRSSV SMALSDFYDN HNDYKTRLSL LVRDSHGEPL LALDSVVDLL
101: QTEGVQAIIG GNSLLEAKLL AELGEKARVP VISLNSPMSL SLSKYTHLIQ ATHNSASEVK GITAFLHGFD WNSVALVLED HDDWRESMHF MVDHFHENNV
201: HVQSKVAFSV TSSEDSLMDR LRELKDLGTT VFVVHLSEVI ATRLFPCAEK LGMMGEGFAW ILTSRSMSSF HDQFIDDLTK EAMEGVVGFK SYIPMSKELH
301: NFTLRWRKTL PVEEVTGSEI TRLSISGVWA HDVAWSLASA AEVTRMPTVT STLLEAIKES RFKGLSGNFQ LDDMKLLSDK FEIVNMIGSG ERRVGFWNSN
401: GSFSNRRQLS STHDNLETII WPGGSAQSPK GRSLRESGRK KLRVLVTSSN RFPRLMKVET DPITHEITIV EGFCIEVFQA SIAPFNYEVE YIRWLNGTNY
501: TKLAYALHSQ KDKYDAAVGD ITITSDRSMY VDFTLPYTEM GLGIVAAKER SMWVFFQPLT PNLWITSAAF FVLTGIIVWL IERAENKEFQ GSWPQQIGVV
601: IWFGFSTLVY AHREKLQHNL SRFVVTVWVF AVLILVTSYT ATLTSMMTVQ QIRFNANEDY VGHLSGSLIA NAALTNSSLR AMRLLGLNTS EDYAQALMNK
701: SVSYIVSELP YLKILLGENP GHFLMVKTQS TTNGFGFVCI LLLHHQLLYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)