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AT5G48360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.835
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Actin-binding FH2 (formin homology 2) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT3G07540.1); Has 2644 Blast hits to 2444 proteins in 226 species: Archae - 2; Bacteria - 35; Metazoa - 1274; Fungi - 135; Plants - 653; Viruses - 75; Other Eukaryotes - 470 (source: NCBI BLink).
Protein Annotations
BioGrid:20135eggNOG:ENOG410XQR0eggNOG:KOG1922EMBL:AK118458EMBL:AP000372EMBL:CP002688EnsemblPlants:AT5G48360
EnsemblPlants:AT5G48360.1entrez:834889GeneID:834889Genevisible:Q8GX37GO:GO:0003779GO:GO:0016021Gramene:AT5G48360.1
hmmpanther:PTHR23213hmmpanther:PTHR23213:SF220HOGENOM:HOG000239832InParanoid:Q8GX37InterPro:IPR015425KEGG:ath:AT5G48360OMA:SPPIWND
PaxDb:Q8GX37Pfam:PF02181Pfam:Q8GX37Pfscan:PS51444PhylomeDB:Q8GX37PRIDE:Q8GX37PRO:PR:Q8GX37
PROSITE:PS51444ProteinModelPortal:Q8GX37Proteomes:UP000006548RefSeq:NP_199647.2SMART:SM00498SMR:Q8GX37STRING:3702.AT5G48360.1
SUPFAM:SSF101447TAIR:AT5G48360TMHMM:TMhelixUniGene:At.29853UniProt:Q8GX37
Coordinates (TAIR10) chr5:+:19595716..19598331
Molecular Weight (calculated) 87124.80 Da
IEP (calculated) 7.58
GRAVY (calculated) -0.31
Length 782 amino acids
Sequence (TAIR10)
(BLAST)
001: MQNFWFAIFF FLLTCAPPSP LSYASTVTLS RRLLYDYESP LPLPLSPISP PFFPLESSPP SPPPPLPPTP PTTFAVFPTF PANISALVLP RSSKPHHTSP
101: TLLLPALSAV LVIATVIGLA LFLYGRHRGQ TRHLKNSHCS SSNTSSYGDE QSHITTNFNM AATTSPSEVF YLNTEESDHI RTGGTFFLKQ DSPEIRPLPP
201: LPPRSFHHNN YETEVNEEDE EEEEDVFFSP MASLPGSANS SPSHSCSSSC SGWVSPARSF SITMSPPNPR YSDATNLQSP SPERLRVRKN YNGNGSSSLR
301: MFSFWNQNMG FGFPRISSAS TSPDRGFIRT PLSSLYSSVS TSPDGLFRKF LDSSPPIWND FSRNVKSVLL SHTASSRRDF VINIGESSSQ QSKVPALPPP
401: TRPPPLVPPS QPFVVQNDVK KQSFSDQPPK QLHWERLRSS SSKLSKEMVE TMFIANSSNP RDLPIQNQVL DPRKAQNIAT LLQLLNLSTK DVCQALLDGD
501: CDVLGAELLE CLSRLAPSKE EERKLKSFSD GSEIGPAERF LKELLHVPFV FKRVDALLFV ANFHSEIKRL RKSFSVVQVA CEELRNSRMF SILLEAILKT
601: GNMMSVRTNR CGDADAFKLD TLLKLVDVKG LDGRSSLLHF VVQEMMKSEG SVRALEGIRN LNTELSNVKK SADIEYGVLR SNVSRICQGL KNIEALLLLS
701: EESGSYGDQW LKFKERMTRF LKTAAEEIVK IKIRESSTLS ALEEVTEQFH GDASKEGHTM RIFMIVRDFL SVLDQVCKEM GD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)