AT5G48360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin-binding FH2 (formin homology 2) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT3G07540.1); Has 2644 Blast hits to 2444 proteins in 226 species: Archae - 2; Bacteria - 35; Metazoa - 1274; Fungi - 135; Plants - 653; Viruses - 75; Other Eukaryotes - 470 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19595716..19598331 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87124.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 782 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQNFWFAIFF FLLTCAPPSP LSYASTVTLS RRLLYDYESP LPLPLSPISP PFFPLESSPP SPPPPLPPTP PTTFAVFPTF PANISALVLP RSSKPHHTSP 101: TLLLPALSAV LVIATVIGLA LFLYGRHRGQ TRHLKNSHCS SSNTSSYGDE QSHITTNFNM AATTSPSEVF YLNTEESDHI RTGGTFFLKQ DSPEIRPLPP 201: LPPRSFHHNN YETEVNEEDE EEEEDVFFSP MASLPGSANS SPSHSCSSSC SGWVSPARSF SITMSPPNPR YSDATNLQSP SPERLRVRKN YNGNGSSSLR 301: MFSFWNQNMG FGFPRISSAS TSPDRGFIRT PLSSLYSSVS TSPDGLFRKF LDSSPPIWND FSRNVKSVLL SHTASSRRDF VINIGESSSQ QSKVPALPPP 401: TRPPPLVPPS QPFVVQNDVK KQSFSDQPPK QLHWERLRSS SSKLSKEMVE TMFIANSSNP RDLPIQNQVL DPRKAQNIAT LLQLLNLSTK DVCQALLDGD 501: CDVLGAELLE CLSRLAPSKE EERKLKSFSD GSEIGPAERF LKELLHVPFV FKRVDALLFV ANFHSEIKRL RKSFSVVQVA CEELRNSRMF SILLEAILKT 601: GNMMSVRTNR CGDADAFKLD TLLKLVDVKG LDGRSSLLHF VVQEMMKSEG SVRALEGIRN LNTELSNVKK SADIEYGVLR SNVSRICQGL KNIEALLLLS 701: EESGSYGDQW LKFKERMTRF LKTAAEEIVK IKIRESSTLS ALEEVTEQFH GDASKEGHTM RIFMIVRDFL SVLDQVCKEM GD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)